Variant report

Variant	rs17156282
Chromosome Location	chr7:28095967-28095968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10486575	1.00[AMR][1000 genomes]
rs1123858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17156137	0.86[JPT][hapmap]
rs17156218	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs17156240	0.85[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57480840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57661426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59980843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28077600-28097600	Weak transcription	Ovary	ovary
2	chr7:28077600-28102000	Weak transcription	Psoas Muscle	Psoas
3	chr7:28091200-28096600	Enhancers	Fetal Heart	heart
4	chr7:28091200-28096800	Enhancers	Colon Smooth Muscle	Colon
5	chr7:28091400-28096600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:28091600-28096400	Enhancers	NHDF-Ad	bronchial
7	chr7:28092000-28096400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:28092000-28096600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:28092400-28096400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:28092800-28097000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:28092800-28097600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:28092800-28104800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:28094000-28096600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:28094000-28096800	Enhancers	Fetal Intestine Small	intestine
15	chr7:28094200-28097000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:28094200-28097000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr7:28094200-28101600	Weak transcription	Pancreas	Pancrea
18	chr7:28094400-28096000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr7:28094400-28096800	Strong transcription	Primary B cells from cord blood	blood
20	chr7:28094400-28108400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr7:28094600-28097600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:28094600-28101600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr7:28094600-28101800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:28094600-28101800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr7:28094600-28101800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:28094600-28101800	Weak transcription	Fetal Stomach	stomach
27	chr7:28094600-28102000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr7:28094600-28102000	Weak transcription	Esophagus	oesophagus
29	chr7:28094600-28112600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr7:28094600-28112600	Weak transcription	Spleen	Spleen
31	chr7:28094600-28128600	Weak transcription	Primary T cells from cord blood	blood
32	chr7:28094800-28109400	Weak transcription	Aorta	Aorta
33	chr7:28095000-28096600	Enhancers	Fetal Intestine Large	intestine
34	chr7:28095000-28102000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr7:28095200-28096200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr7:28095200-28096200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr7:28095200-28096200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr7:28095200-28097600	Weak transcription	Fetal Muscle Leg	muscle
39	chr7:28095200-28097600	Weak transcription	HMEC	breast
40	chr7:28095200-28097800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr7:28095200-28099800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr7:28095200-28100000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr7:28095200-28101600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr7:28095200-28101600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr7:28095200-28102000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr7:28095200-28104200	Weak transcription	Adipose Nuclei	Adipose
47	chr7:28095200-28104800	Weak transcription	Right Ventricle	heart
48	chr7:28095600-28101800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:28095600-28101800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr7:28095800-28097000	Enhancers	A549	lung

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