Variant report

Variant	rs17157328
Chromosome Location	chr10:45501744-45501745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45501582..45503309-chr10:45728475..45730183,2	K562	blood:
2	chr10:45499571..45502259-chr10:45742998..45745677,2	K562	blood:
3	chr10:45470718..45473140-chr10:45500575..45504463,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10047345	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11239310	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239337	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257275	0.87[EUR][1000 genomes]
rs12264627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17157327	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095088	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2104898	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41301613	0.81[EUR][1000 genomes]
rs4339993	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4573635	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56259997	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57046651	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59085162	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60581169	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61183370	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6593454	0.98[EUR][1000 genomes]
rs7080655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095202	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72782417	0.89[EUR][1000 genomes]
rs73283471	0.94[EUR][1000 genomes]
rs7902918	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7915377	0.96[EUR][1000 genomes]
rs7918953	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45497000-45511000	Weak transcription	Gastric	stomach
2	chr10:45497200-45504000	Weak transcription	Esophagus	oesophagus
3	chr10:45497400-45503800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr10:45497400-45504000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:45497400-45504000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:45497600-45502800	Weak transcription	Fetal Brain Male	brain
7	chr10:45497600-45503800	Weak transcription	Brain Substantia Nigra	brain
8	chr10:45497600-45504000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:45497800-45502200	Weak transcription	Right Ventricle	heart
10	chr10:45497800-45504000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:45498200-45503800	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:45498200-45503800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:45498200-45504000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:45498400-45503800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:45499200-45502800	Enhancers	HepG2	liver
16	chr10:45499400-45502200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:45499400-45502400	Strong transcription	Thymus	Thymus
18	chr10:45499400-45502600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:45499400-45503800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:45499400-45504000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr10:45499400-45504000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr10:45499400-45504000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:45499400-45504000	Weak transcription	Fetal Stomach	stomach
24	chr10:45499400-45504000	Weak transcription	Ovary	ovary
25	chr10:45499400-45504000	Weak transcription	Psoas Muscle	Psoas
26	chr10:45499400-45504000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:45499400-45504000	Weak transcription	Spleen	Spleen
28	chr10:45499400-45511000	Weak transcription	Pancreas	Pancrea
29	chr10:45499600-45501800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:45499600-45502400	Strong transcription	Fetal Thymus	thymus
31	chr10:45499600-45504000	Weak transcription	Fetal Intestine Small	intestine
32	chr10:45499600-45504000	Weak transcription	HSMMtube	muscle
33	chr10:45499800-45503800	Weak transcription	NHDF-Ad	bronchial
34	chr10:45499800-45504000	Weak transcription	Placenta	Placenta
35	chr10:45500000-45503600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr10:45500200-45503800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr10:45500400-45502000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr10:45500400-45502200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:45500400-45503200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:45500400-45503400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr10:45500400-45504000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:45500400-45510400	Weak transcription	Primary hematopoietic stem cells	blood
43	chr10:45500600-45502200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:45500600-45502400	Strong transcription	Primary B cells from cord blood	blood
45	chr10:45500600-45502400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:45500600-45503000	Weak transcription	Fetal Heart	heart
47	chr10:45500600-45503800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr10:45500600-45503800	Weak transcription	Brain Hippocampus Middle	brain
49	chr10:45500600-45503800	Weak transcription	HUVEC	blood vessel
50	chr10:45500600-45503800	Weak transcription	Osteobl	bone

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