Variant report

Variant	rs17157993
Chromosome Location	chr11:63009348-63009349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11820377	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826338	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17157917	1.00[AMR][1000 genomes]
rs1939737	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1939763	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58791109	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103820	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499734	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499739	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499787	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499788	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499794	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501612	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501617	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931060	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045308	chr11:62803635-63109338	Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv541059	chr11:62803635-63109338	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv555177	chr11:62847518-63110569	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049725	chr11:62848172-63057827	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv541060	chr11:62848172-63057827	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1047571	chr11:62848172-63109338	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv430397	chr11:62852616-63072310	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv897627	chr11:62984868-63119486	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63008200-63009400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:63008200-63012800	Enhancers	Thymus	Thymus
3	chr11:63008600-63010600	Enhancers	Primary T cells from cord blood	blood
4	chr11:63008600-63011400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr11:63008800-63009600	Enhancers	Esophagus	oesophagus
6	chr11:63008800-63009800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:63008800-63009800	Flanking Active TSS	Liver	Liver
8	chr11:63008800-63010000	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr11:63008800-63010600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr11:63008800-63010800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr11:63008800-63011200	Enhancers	Fetal Thymus	thymus
12	chr11:63008800-63021800	Enhancers	HepG2	liver
13	chr11:63009000-63009400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:63009000-63010000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr11:63009000-63010200	Weak transcription	Adipose Nuclei	Adipose
16	chr11:63009000-63010600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr11:63009000-63014600	Weak transcription	Pancreas	Pancrea
18	chr11:63009200-63011000	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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