Variant report

Variant	rs73499794
Chromosome Location	chr11:62977807-62977808
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11820377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826338	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17157917	1.00[AMR][1000 genomes]
rs17157993	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1939737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1939763	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58791109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103820	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499734	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499739	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501612	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931060	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34011	chr11:62652779-62993702	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1045308	chr11:62803635-63109338	Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv541059	chr11:62803635-63109338	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv555177	chr11:62847518-63110569	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1049725	chr11:62848172-63057827	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv541060	chr11:62848172-63057827	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1047571	chr11:62848172-63109338	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv430397	chr11:62852616-63072310	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv2753282	chr11:62883681-62986146	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv3363793	chr11:62975063-62981962	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62973600-62978800	Strong transcription	Liver	Liver
2	chr11:62975400-62978600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:62976600-62978200	Enhancers	Fetal Stomach	stomach
4	chr11:62976800-62978400	Enhancers	Primary hematopoietic stem cells	blood
5	chr11:62977000-62978400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:62977200-62978600	Enhancers	Adipose Nuclei	Adipose
7	chr11:62977400-62978000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:62977800-62978800	Enhancers	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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