Variant report

Variant	rs17158174
Chromosome Location	chr10:43280830-43280831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43280780..43283548-chr10:43285550..43289909,6	K562	blood:
2	chr10:43276752..43278431-chr10:43279781..43281532,2	K562	blood:
3	chr10:43277103..43279687-chr10:43279795..43282779,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165733	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17158193	1.00[YRI][hapmap]
rs17159047	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs17159071	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17159198	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs2078397	0.92[LWK][hapmap];0.85[MKK][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs539987	1.00[AMR][1000 genomes]
rs579501	0.82[ASW][hapmap]
rs61736599	0.85[AFR][1000 genomes]
rs6593493	0.84[YRI][hapmap];0.80[AFR][1000 genomes]
rs7091439	0.84[YRI][hapmap];0.87[AFR][1000 genomes]
rs7898007	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs7898266	0.91[YRI][hapmap];0.89[AFR][1000 genomes]
rs7900968	1.00[AMR][1000 genomes]
rs7905633	0.80[AFR][1000 genomes]
rs7908539	1.00[YRI][hapmap]
rs7923121	0.92[YRI][hapmap]
rs7923317	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv2757381	chr10:43104068-43352995	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv34929	chr10:43116194-43329770	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv895076	chr10:43234432-43326627	Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1047838	chr10:43234590-43379219	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv947889	chr10:43278237-43290003	Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43279000-43281000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:43279000-43281000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:43279000-43281000	Weak transcription	Aorta	Aorta
4	chr10:43279000-43281000	Weak transcription	Esophagus	oesophagus
5	chr10:43279000-43281000	Weak transcription	Gastric	stomach
6	chr10:43279000-43281000	Weak transcription	Pancreas	Pancrea
7	chr10:43279000-43281000	Weak transcription	Spleen	Spleen
8	chr10:43279000-43284400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:43279000-43288200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:43279000-43292000	Weak transcription	Stomach Mucosa	stomach
11	chr10:43279200-43281000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr10:43279200-43281000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:43279200-43281000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:43279200-43281000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:43279200-43281000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:43279200-43281000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:43279200-43281000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:43279200-43281000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:43279200-43281000	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:43279200-43281000	Weak transcription	Ovary	ovary
21	chr10:43279200-43281000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr10:43279200-43281000	Weak transcription	Psoas Muscle	Psoas
23	chr10:43279200-43281000	Weak transcription	Right Ventricle	heart
24	chr10:43279200-43281000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:43279200-43281000	Weak transcription	HSMMtube	muscle
26	chr10:43279200-43281200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:43279200-43281200	Weak transcription	Brain Substantia Nigra	brain
28	chr10:43279200-43281200	Weak transcription	Small Intestine	intestine
29	chr10:43279200-43292800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:43279400-43281000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr10:43279400-43281200	Weak transcription	NHLF	lung
32	chr10:43279400-43281400	Weak transcription	Colon Smooth Muscle	Colon
33	chr10:43279400-43281800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:43279400-43292600	Weak transcription	Fetal Heart	heart
35	chr10:43279600-43281000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr10:43279600-43282400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
37	chr10:43279800-43281000	Weak transcription	Primary B cells from cord blood	blood
38	chr10:43279800-43281000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr10:43279800-43281000	Weak transcription	GM12878-XiMat	blood
40	chr10:43279800-43281200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr10:43279800-43282000	Strong transcription	Brain Angular Gyrus	brain
42	chr10:43279800-43282200	Strong transcription	Fetal Intestine Small	intestine
43	chr10:43279800-43282400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:43279800-43282400	Strong transcription	Lung	lung
45	chr10:43279800-43282800	Strong transcription	Fetal Stomach	stomach
46	chr10:43279800-43283400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:43279800-43283400	Strong transcription	Fetal Muscle Trunk	muscle
48	chr10:43279800-43283400	Strong transcription	NHEK	skin
49	chr10:43279800-43284200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:43279800-43284800	Strong transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links