Variant report

Variant	rs7091439
Chromosome Location	chr10:43302408-43302409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs1085783	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1091925	0.92[EUR][1000 genomes]
rs1342143	1.00[ASN][1000 genomes]
rs17158174	0.84[YRI][hapmap];0.87[AFR][1000 genomes]
rs17158193	1.00[CEU][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159047	1.00[CEU][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159071	1.00[CEU][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17159198	1.00[CEU][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17344904	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17344997	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17345889	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429275	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429415	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17430796	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17431976	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs17432011	1.00[ASN][1000 genomes]
rs1775069	1.00[ASN][1000 genomes]
rs1935644	1.00[ASN][1000 genomes]
rs2051043	1.00[ASN][1000 genomes]
rs2078397	1.00[CEU][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2744082	1.00[ASN][1000 genomes]
rs2795505	1.00[ASN][1000 genomes]
rs2796563	1.00[ASN][1000 genomes]
rs2796565	1.00[ASN][1000 genomes]
rs41295810	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41295811	1.00[ASN][1000 genomes]
rs41295813	1.00[ASN][1000 genomes]
rs515365	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61736599	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61842935	1.00[ASN][1000 genomes]
rs61843368	0.92[EUR][1000 genomes]
rs61843371	0.89[EUR][1000 genomes]
rs61843372	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843373	1.00[ASN][1000 genomes]
rs61843374	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843380	1.00[ASN][1000 genomes]
rs61843381	1.00[ASN][1000 genomes]
rs61843382	1.00[ASN][1000 genomes]
rs61843407	1.00[ASN][1000 genomes]
rs61843419	1.00[ASN][1000 genomes]
rs61843420	1.00[ASN][1000 genomes]
rs61843422	1.00[ASN][1000 genomes]
rs61843437	1.00[ASN][1000 genomes]
rs61843438	1.00[ASN][1000 genomes]
rs61843457	1.00[ASN][1000 genomes]
rs61843459	1.00[ASN][1000 genomes]
rs61843895	1.00[ASN][1000 genomes]
rs61843955	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61843956	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61843958	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61843959	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61844760	1.00[ASN][1000 genomes]
rs61844763	1.00[ASN][1000 genomes]
rs61844765	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844766	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61844768	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844770	1.00[ASN][1000 genomes]
rs61844771	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844772	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844774	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844775	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844813	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844814	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61844815	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844816	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844817	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844821	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844822	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61844827	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844828	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844829	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844830	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61844832	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844835	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844837	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844848	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844849	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844854	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845260	1.00[ASN][1000 genomes]
rs61845261	1.00[ASN][1000 genomes]
rs61845262	1.00[ASN][1000 genomes]
rs61845264	1.00[ASN][1000 genomes]
rs61845265	1.00[ASN][1000 genomes]
rs61845266	1.00[ASN][1000 genomes]
rs61845268	1.00[ASN][1000 genomes]
rs61845269	1.00[ASN][1000 genomes]
rs61845270	1.00[ASN][1000 genomes]
rs61845271	1.00[ASN][1000 genomes]
rs61845272	1.00[ASN][1000 genomes]
rs61845273	1.00[ASN][1000 genomes]
rs61845274	1.00[ASN][1000 genomes]
rs61845279	1.00[ASN][1000 genomes]
rs61845280	1.00[ASN][1000 genomes]
rs61845281	1.00[ASN][1000 genomes]
rs61845282	1.00[ASN][1000 genomes]
rs61845306	1.00[ASN][1000 genomes]
rs61845307	1.00[ASN][1000 genomes]
rs61845308	1.00[ASN][1000 genomes]
rs61845309	1.00[ASN][1000 genomes]
rs61845310	1.00[ASN][1000 genomes]
rs61845963	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845964	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638507	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593493	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs7074380	1.00[ASN][1000 genomes]
rs7089165	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097557	1.00[ASN][1000 genomes]
rs74135429	1.00[ASN][1000 genomes]
rs788248	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788250	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788286	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788294	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898007	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs7898266	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs7904220	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905633	0.80[AFR][1000 genomes]
rs7908539	1.00[CEU][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915796	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923121	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv2757381	chr10:43104068-43352995	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv34929	chr10:43116194-43329770	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv895076	chr10:43234432-43326627	Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1047838	chr10:43234590-43379219	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
14	nsv947891	chr10:43299039-43319274	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv14695	chr10:43301539-43355457	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43279800-43302600	Strong transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:43279800-43303400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:43279800-43303400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:43279800-43303400	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr10:43279800-43303800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
6	chr10:43279800-43303800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:43279800-43305000	Strong transcription	Primary B cells from peripheral blood	blood
8	chr10:43279800-43306200	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:43279800-43306400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:43279800-43307600	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:43279800-43307800	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr10:43279800-43307800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:43279800-43308400	Strong transcription	Fetal Intestine Large	intestine
14	chr10:43279800-43308800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:43279800-43309000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr10:43279800-43324000	Strong transcription	Liver	Liver
17	chr10:43279800-43328200	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr10:43280000-43303200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:43280000-43303600	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr10:43280000-43303600	Strong transcription	HSMM	muscle
21	chr10:43280000-43303600	Strong transcription	Osteobl	bone
22	chr10:43280000-43303800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:43280000-43304600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:43280000-43305000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:43280000-43305800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:43280000-43306400	Strong transcription	Placenta	Placenta
27	chr10:43280000-43306400	Strong transcription	A549	lung
28	chr10:43280000-43306800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:43280000-43309600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:43280000-43310800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:43280200-43306000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:43280200-43310600	Strong transcription	Primary T cells from cord blood	blood
33	chr10:43281000-43303200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:43281000-43308600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:43281800-43306800	Strong transcription	Dnd41	blood
36	chr10:43282400-43308200	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr10:43284200-43306400	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr10:43284400-43306400	Strong transcription	Primary hematopoietic stem cells	blood
39	chr10:43285800-43303200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:43286000-43303000	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr10:43293000-43307600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr10:43293200-43332400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr10:43294400-43311800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr10:43294600-43322800	Weak transcription	Stomach Mucosa	stomach
45	chr10:43295000-43308000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:43295000-43309400	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr10:43295600-43311800	Weak transcription	Pancreas	Pancrea
48	chr10:43296600-43307600	Weak transcription	Aorta	Aorta
49	chr10:43296600-43307600	Weak transcription	Spleen	Spleen
50	chr10:43296600-43307800	Weak transcription	Esophagus	oesophagus

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