Variant report

Variant	rs61843895
Chromosome Location	chr10:43145348-43145349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43144345..43147006-chr21:15489906..15492564,2	K562	blood:
2	chr10:43144117..43146746-chr10:43147930..43151042,3	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs17158193	1.00[ASN][1000 genomes]
rs17159047	1.00[ASN][1000 genomes]
rs17344904	1.00[ASN][1000 genomes]
rs17344997	1.00[ASN][1000 genomes]
rs17429275	1.00[ASN][1000 genomes]
rs17429415	1.00[ASN][1000 genomes]
rs2078397	1.00[ASN][1000 genomes]
rs41295810	1.00[ASN][1000 genomes]
rs515365	1.00[ASN][1000 genomes]
rs61736599	1.00[ASN][1000 genomes]
rs61842931	1.00[ASN][1000 genomes]
rs61842933	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61842935	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843955	1.00[ASN][1000 genomes]
rs61843956	1.00[ASN][1000 genomes]
rs61843958	1.00[ASN][1000 genomes]
rs61843959	1.00[ASN][1000 genomes]
rs61844760	1.00[ASN][1000 genomes]
rs61844763	1.00[ASN][1000 genomes]
rs61844765	1.00[ASN][1000 genomes]
rs61844768	1.00[ASN][1000 genomes]
rs61844770	1.00[ASN][1000 genomes]
rs61844771	1.00[ASN][1000 genomes]
rs61844772	1.00[ASN][1000 genomes]
rs61844774	1.00[ASN][1000 genomes]
rs61844775	1.00[ASN][1000 genomes]
rs61844813	1.00[ASN][1000 genomes]
rs61844815	1.00[ASN][1000 genomes]
rs61844816	1.00[ASN][1000 genomes]
rs61844817	1.00[ASN][1000 genomes]
rs61844821	1.00[ASN][1000 genomes]
rs61844827	1.00[ASN][1000 genomes]
rs61844828	1.00[ASN][1000 genomes]
rs61844829	1.00[ASN][1000 genomes]
rs61844832	1.00[ASN][1000 genomes]
rs61844835	1.00[ASN][1000 genomes]
rs61844837	1.00[ASN][1000 genomes]
rs61844848	1.00[ASN][1000 genomes]
rs61844849	1.00[ASN][1000 genomes]
rs61844854	1.00[ASN][1000 genomes]
rs61845565	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61845568	1.00[ASN][1000 genomes]
rs638507	1.00[ASN][1000 genomes]
rs7089165	1.00[ASN][1000 genomes]
rs7091439	1.00[ASN][1000 genomes]
rs7904220	1.00[ASN][1000 genomes]
rs7908539	1.00[ASN][1000 genomes]
rs7915796	1.00[ASN][1000 genomes]
rs7923121	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817455	chr10:42607635-43151812	Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv895064	chr10:42783481-43243325	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	nsv469725	chr10:42965130-43178323	Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv482513	chr10:42965130-43178323	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
12	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
13	esv2757381	chr10:43104068-43352995	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
14	esv34929	chr10:43116194-43329770	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
15	esv3350301	chr10:43140755-43150235	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43135200-43145600	Weak transcription	Primary T cells from cord blood	blood
2	chr10:43141600-43145800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:43141800-43145800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:43142000-43145600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:43142600-43147000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:43142800-43147200	Weak transcription	Stomach Mucosa	stomach
7	chr10:43143000-43146000	Weak transcription	Fetal Intestine Large	intestine
8	chr10:43143000-43148600	Enhancers	K562	blood
9	chr10:43143400-43148200	Weak transcription	Fetal Kidney	kidney
10	chr10:43144400-43146000	Weak transcription	Fetal Intestine Small	intestine
11	chr10:43144800-43145400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:43144800-43145400	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links