Variant report

Variant	rs61844837
Chromosome Location	chr10:43332791-43332792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr10:43332504-43332833	ECC-1	luminal epithelium:	n/a	n/a
2	MXI1	chr10:43331906-43332972	SK-N-SH	brain:	n/a	n/a
3	GATA3	chr10:43332494-43332931	MCF-7	breast:	n/a	n/a
4	CHD1	chr10:43332780-43332819	H1-hESC	embryonic stem cell:	n/a	n/a
5	MAX	chr10:43332568-43332925	MCF-7	breast:	n/a	n/a
6	HA-E2F1	chr10:43332216-43333087	MCF-7	breast:	n/a	chr10:43332393-43332402

Variant related genes	Relation type
RNU6-885P	TF binding region

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs1085783	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1091925	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1342143	1.00[ASN][1000 genomes]
rs17158193	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159047	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159071	0.95[EUR][1000 genomes]
rs17159198	0.97[EUR][1000 genomes]
rs17344904	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17344997	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17345889	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429275	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429415	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17430796	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17431976	1.00[ASN][1000 genomes]
rs17432011	1.00[ASN][1000 genomes]
rs1775069	1.00[ASN][1000 genomes]
rs1935644	1.00[ASN][1000 genomes]
rs2051043	1.00[ASN][1000 genomes]
rs2078397	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2744082	1.00[ASN][1000 genomes]
rs2795505	1.00[ASN][1000 genomes]
rs2796563	1.00[ASN][1000 genomes]
rs2796565	1.00[ASN][1000 genomes]
rs41295810	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41295811	1.00[ASN][1000 genomes]
rs41295813	1.00[ASN][1000 genomes]
rs515365	1.00[ASN][1000 genomes]
rs61736599	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843368	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61843371	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61843372	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843373	1.00[ASN][1000 genomes]
rs61843374	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843380	1.00[ASN][1000 genomes]
rs61843381	1.00[ASN][1000 genomes]
rs61843382	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61843407	1.00[ASN][1000 genomes]
rs61843419	1.00[ASN][1000 genomes]
rs61843420	1.00[ASN][1000 genomes]
rs61843422	1.00[ASN][1000 genomes]
rs61843437	1.00[ASN][1000 genomes]
rs61843438	1.00[ASN][1000 genomes]
rs61843457	1.00[ASN][1000 genomes]
rs61843459	1.00[ASN][1000 genomes]
rs61843895	1.00[ASN][1000 genomes]
rs61843955	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61843956	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61843958	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61843959	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61844760	1.00[ASN][1000 genomes]
rs61844763	1.00[ASN][1000 genomes]
rs61844765	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61844766	0.83[AMR][1000 genomes]
rs61844768	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61844770	1.00[ASN][1000 genomes]
rs61844771	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61844772	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61844774	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844775	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844813	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844814	0.95[EUR][1000 genomes]
rs61844815	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844816	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844817	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844821	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844822	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61844827	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844828	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844829	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844830	0.96[EUR][1000 genomes]
rs61844832	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844835	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844848	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844849	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844854	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845260	1.00[ASN][1000 genomes]
rs61845261	1.00[ASN][1000 genomes]
rs61845262	1.00[ASN][1000 genomes]
rs61845264	1.00[ASN][1000 genomes]
rs61845265	1.00[ASN][1000 genomes]
rs61845266	1.00[ASN][1000 genomes]
rs61845268	1.00[ASN][1000 genomes]
rs61845269	1.00[ASN][1000 genomes]
rs61845270	1.00[ASN][1000 genomes]
rs61845271	1.00[ASN][1000 genomes]
rs61845272	1.00[ASN][1000 genomes]
rs61845273	1.00[ASN][1000 genomes]
rs61845274	1.00[ASN][1000 genomes]
rs61845279	1.00[ASN][1000 genomes]
rs61845280	1.00[ASN][1000 genomes]
rs61845281	1.00[ASN][1000 genomes]
rs61845282	1.00[ASN][1000 genomes]
rs61845306	1.00[ASN][1000 genomes]
rs61845307	1.00[ASN][1000 genomes]
rs61845308	1.00[ASN][1000 genomes]
rs61845309	1.00[ASN][1000 genomes]
rs61845310	1.00[ASN][1000 genomes]
rs61845311	1.00[ASN][1000 genomes]
rs61845312	1.00[ASN][1000 genomes]
rs61845314	1.00[ASN][1000 genomes]
rs61845315	1.00[ASN][1000 genomes]
rs61845316	1.00[ASN][1000 genomes]
rs61845317	1.00[ASN][1000 genomes]
rs61845318	1.00[ASN][1000 genomes]
rs61845320	1.00[ASN][1000 genomes]
rs61845321	1.00[ASN][1000 genomes]
rs61845323	1.00[ASN][1000 genomes]
rs61845324	1.00[ASN][1000 genomes]
rs61845325	1.00[ASN][1000 genomes]
rs61845326	1.00[ASN][1000 genomes]
rs61845327	1.00[ASN][1000 genomes]
rs61845328	1.00[ASN][1000 genomes]
rs61845329	1.00[ASN][1000 genomes]
rs61845330	1.00[ASN][1000 genomes]
rs61845331	1.00[ASN][1000 genomes]
rs61845332	1.00[ASN][1000 genomes]
rs61845333	1.00[ASN][1000 genomes]
rs61845335	1.00[ASN][1000 genomes]
rs61845336	1.00[ASN][1000 genomes]
rs61845338	1.00[ASN][1000 genomes]
rs61845339	1.00[ASN][1000 genomes]
rs61845340	1.00[ASN][1000 genomes]
rs61845341	1.00[ASN][1000 genomes]
rs61845963	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845964	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638507	1.00[ASN][1000 genomes]
rs7074380	1.00[ASN][1000 genomes]
rs7089165	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091439	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097557	1.00[ASN][1000 genomes]
rs7100455	1.00[ASN][1000 genomes]
rs74135429	1.00[ASN][1000 genomes]
rs788248	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788250	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788286	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788294	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904220	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908539	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915796	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923121	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv2757381	chr10:43104068-43352995	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	nsv1047838	chr10:43234590-43379219	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
11	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
12	esv14695	chr10:43301539-43355457	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv8627	chr10:43324929-43354934	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island miRNA target site	1 gene(s)	inside rSNPs	diseases
14	esv1842859	chr10:43327115-43334095	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43321400-43332800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:43327200-43332800	Weak transcription	Spleen	Spleen
3	chr10:43327600-43332800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:43328200-43333800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:43331600-43333000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr10:43331800-43333000	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr10:43332000-43333000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr10:43332000-43333000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr10:43332200-43332800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr10:43332200-43332800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:43332200-43332800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:43332200-43332800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:43332200-43332800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:43332200-43332800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:43332200-43332800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:43332200-43332800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
17	chr10:43332200-43332800	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr10:43332200-43332800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr10:43332200-43332800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:43332200-43332800	Active TSS	Brain Anterior Caudate	brain
21	chr10:43332200-43332800	Active TSS	Brain Cingulate Gyrus	brain
22	chr10:43332200-43332800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
23	chr10:43332200-43332800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:43332200-43332800	Active TSS	Colon Smooth Muscle	Colon
25	chr10:43332200-43332800	Active TSS	Duodenum Mucosa	Duodenum
26	chr10:43332200-43332800	Bivalent Enhancer	Fetal Brain Male	brain
27	chr10:43332200-43332800	Enhancers	Lung	lung
28	chr10:43332200-43332800	Enhancers	Ovary	ovary
29	chr10:43332200-43332800	Bivalent/Poised TSS	Thymus	Thymus
30	chr10:43332200-43333000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
31	chr10:43332200-43333000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:43332200-43333000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
33	chr10:43332200-43333000	Enhancers	Liver	Liver
34	chr10:43332200-43333000	Active TSS	Rectal Smooth Muscle	rectum
35	chr10:43332200-43333000	Active TSS	Right Atrium	heart
36	chr10:43332200-43333000	Active TSS	A549	lung
37	chr10:43332200-43333000	Active TSS	HepG2	liver
38	chr10:43332200-43333000	Active TSS	NHEK	skin
39	chr10:43332400-43332800	Active TSS	H1 Cell Line	embryonic stem cell
40	chr10:43332400-43332800	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:43332400-43332800	Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr10:43332400-43332800	Active TSS	Muscle Satellite Cultured Cells	--
43	chr10:43332400-43332800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:43332400-43332800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:43332400-43332800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:43332400-43332800	Active TSS	Brain Angular Gyrus	brain
47	chr10:43332400-43332800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
48	chr10:43332400-43332800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
49	chr10:43332400-43332800	Flanking Active TSS	Esophagus	oesophagus
50	chr10:43332400-43332800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links