Variant report

Variant	rs61843420
Chromosome Location	chr10:43424504-43424505
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43423641..43426071-chr10:43452071..43454009,2	MCF-7	breast:

Extended variants
information (count: 185 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:177)

rs_ID	r²[population]
rs1085783	1.00[ASN][1000 genomes]
rs1106646	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1106647	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1342143	1.00[ASN][1000 genomes]
rs17158193	1.00[ASN][1000 genomes]
rs17159047	1.00[ASN][1000 genomes]
rs17344904	1.00[ASN][1000 genomes]
rs17344997	1.00[ASN][1000 genomes]
rs17345889	1.00[ASN][1000 genomes]
rs17347902	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17347944	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429275	1.00[ASN][1000 genomes]
rs17429415	1.00[ASN][1000 genomes]
rs17430796	1.00[ASN][1000 genomes]
rs17431976	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17432011	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17432429	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17432456	0.85[EUR][1000 genomes]
rs17432532	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17432714	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17432763	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17432833	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775069	1.00[ASN][1000 genomes]
rs1935644	1.00[ASN][1000 genomes]
rs2051043	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2078397	1.00[ASN][1000 genomes]
rs2744082	1.00[ASN][1000 genomes]
rs2795505	1.00[ASN][1000 genomes]
rs2796563	1.00[ASN][1000 genomes]
rs2796565	1.00[ASN][1000 genomes]
rs3026691	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3026692	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3026695	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3026700	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41295810	1.00[ASN][1000 genomes]
rs41295811	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41295813	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515365	1.00[ASN][1000 genomes]
rs61736599	1.00[ASN][1000 genomes]
rs61843172	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843173	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843174	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843175	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843176	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843177	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843178	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843179	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843180	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843181	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843182	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843183	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843184	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843185	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843186	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843187	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843188	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843189	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843190	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843191	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843192	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843194	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61843196	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843197	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61843198	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843199	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843201	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843202	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61843372	1.00[ASN][1000 genomes]
rs61843373	1.00[ASN][1000 genomes]
rs61843374	1.00[ASN][1000 genomes]
rs61843380	1.00[ASN][1000 genomes]
rs61843381	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843382	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843407	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843419	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61843422	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843427	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61843429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61843437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61843457	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844763	1.00[ASN][1000 genomes]
rs61844765	1.00[ASN][1000 genomes]
rs61844768	1.00[ASN][1000 genomes]
rs61844770	1.00[ASN][1000 genomes]
rs61844771	1.00[ASN][1000 genomes]
rs61844772	1.00[ASN][1000 genomes]
rs61844774	1.00[ASN][1000 genomes]
rs61844775	1.00[ASN][1000 genomes]
rs61844813	1.00[ASN][1000 genomes]
rs61844815	1.00[ASN][1000 genomes]
rs61844816	1.00[ASN][1000 genomes]
rs61844817	1.00[ASN][1000 genomes]
rs61844821	1.00[ASN][1000 genomes]
rs61844827	1.00[ASN][1000 genomes]
rs61844828	1.00[ASN][1000 genomes]
rs61844829	1.00[ASN][1000 genomes]
rs61844832	1.00[ASN][1000 genomes]
rs61844835	1.00[ASN][1000 genomes]
rs61844837	1.00[ASN][1000 genomes]
rs61844848	1.00[ASN][1000 genomes]
rs61844849	1.00[ASN][1000 genomes]
rs61844854	1.00[ASN][1000 genomes]
rs61845260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845262	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845265	1.00[ASN][1000 genomes]
rs61845266	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845268	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845269	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845270	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845271	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845272	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845273	1.00[ASN][1000 genomes]
rs61845274	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845279	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845280	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845281	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845282	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845306	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845307	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845308	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845309	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845310	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845311	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845312	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845314	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845315	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845316	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845317	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845318	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845320	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845321	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845323	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845324	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845325	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845326	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845327	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845328	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845329	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845330	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845331	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845332	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845333	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845335	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845336	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845338	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845339	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845340	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845341	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845342	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845343	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845344	0.82[EUR][1000 genomes]
rs61845345	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845346	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845963	1.00[ASN][1000 genomes]
rs61845964	1.00[ASN][1000 genomes]
rs638507	1.00[ASN][1000 genomes]
rs7074380	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089165	1.00[ASN][1000 genomes]
rs7091439	1.00[ASN][1000 genomes]
rs7097557	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100455	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74135429	1.00[ASN][1000 genomes]
rs788248	1.00[ASN][1000 genomes]
rs788250	1.00[ASN][1000 genomes]
rs788286	1.00[ASN][1000 genomes]
rs788294	1.00[ASN][1000 genomes]
rs7898367	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904220	1.00[ASN][1000 genomes]
rs7908539	1.00[ASN][1000 genomes]
rs7915796	1.00[ASN][1000 genomes]
rs7923121	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43422800-43425400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:43422800-43428200	Weak transcription	Pancreas	Pancrea
3	chr10:43423200-43426600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:43423600-43426400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:43424200-43428200	Weak transcription	Right Atrium	heart

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