Variant report

Variant	rs7089165
Chromosome Location	chr10:43281919-43281920
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43278228..43281116-chr10:43281806..43285386,3	K562	blood:
2	chr10:43280780..43283548-chr10:43285550..43289909,6	K562	blood:
3	chr10:43277103..43279687-chr10:43279795..43282779,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165733	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1085783	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1091925	0.88[EUR][1000 genomes]
rs1342143	1.00[ASN][1000 genomes]
rs17158193	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159047	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159071	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17159198	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17344904	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17344997	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17345889	1.00[ASN][1000 genomes]
rs17429275	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429415	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17430796	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775069	1.00[ASN][1000 genomes]
rs1935644	1.00[ASN][1000 genomes]
rs2078397	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2744082	1.00[ASN][1000 genomes]
rs2795505	1.00[ASN][1000 genomes]
rs2796563	1.00[ASN][1000 genomes]
rs2796565	1.00[ASN][1000 genomes]
rs41295810	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515365	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61736599	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61842933	1.00[ASN][1000 genomes]
rs61842935	1.00[ASN][1000 genomes]
rs61843368	0.88[EUR][1000 genomes]
rs61843371	0.85[EUR][1000 genomes]
rs61843372	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843373	1.00[ASN][1000 genomes]
rs61843374	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843380	1.00[ASN][1000 genomes]
rs61843381	1.00[ASN][1000 genomes]
rs61843382	1.00[ASN][1000 genomes]
rs61843407	1.00[ASN][1000 genomes]
rs61843419	1.00[ASN][1000 genomes]
rs61843420	1.00[ASN][1000 genomes]
rs61843422	1.00[ASN][1000 genomes]
rs61843437	1.00[ASN][1000 genomes]
rs61843438	1.00[ASN][1000 genomes]
rs61843457	1.00[ASN][1000 genomes]
rs61843459	1.00[ASN][1000 genomes]
rs61843895	1.00[ASN][1000 genomes]
rs61843955	1.00[ASN][1000 genomes]
rs61843956	1.00[ASN][1000 genomes]
rs61843958	1.00[ASN][1000 genomes]
rs61843959	1.00[ASN][1000 genomes]
rs61844760	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61844763	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61844765	1.00[ASN][1000 genomes]
rs61844768	1.00[ASN][1000 genomes]
rs61844770	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61844771	1.00[ASN][1000 genomes]
rs61844772	1.00[ASN][1000 genomes]
rs61844774	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844775	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844813	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844814	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61844815	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844816	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844817	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844821	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844822	0.96[EUR][1000 genomes]
rs61844827	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844828	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844829	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844830	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61844832	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844835	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844837	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844848	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844849	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844854	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845260	1.00[ASN][1000 genomes]
rs61845261	1.00[ASN][1000 genomes]
rs61845262	1.00[ASN][1000 genomes]
rs61845264	1.00[ASN][1000 genomes]
rs61845265	1.00[ASN][1000 genomes]
rs61845266	1.00[ASN][1000 genomes]
rs61845268	1.00[ASN][1000 genomes]
rs61845269	1.00[ASN][1000 genomes]
rs61845270	1.00[ASN][1000 genomes]
rs61845963	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845964	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638507	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7074380	1.00[ASN][1000 genomes]
rs7091439	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097557	1.00[ASN][1000 genomes]
rs74135429	1.00[ASN][1000 genomes]
rs788248	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788250	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788286	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788294	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904220	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908539	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915796	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923121	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv2757381	chr10:43104068-43352995	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv34929	chr10:43116194-43329770	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv895076	chr10:43234432-43326627	Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1047838	chr10:43234590-43379219	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv947889	chr10:43278237-43290003	Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43279000-43284400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:43279000-43288200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:43279000-43292000	Weak transcription	Stomach Mucosa	stomach
4	chr10:43279200-43292800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:43279400-43292600	Weak transcription	Fetal Heart	heart
6	chr10:43279600-43282400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
7	chr10:43279800-43282000	Strong transcription	Brain Angular Gyrus	brain
8	chr10:43279800-43282200	Strong transcription	Fetal Intestine Small	intestine
9	chr10:43279800-43282400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:43279800-43282400	Strong transcription	Lung	lung
11	chr10:43279800-43282800	Strong transcription	Fetal Stomach	stomach
12	chr10:43279800-43283400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:43279800-43283400	Strong transcription	Fetal Muscle Trunk	muscle
14	chr10:43279800-43283400	Strong transcription	NHEK	skin
15	chr10:43279800-43284200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:43279800-43284800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:43279800-43284800	Strong transcription	HepG2	liver
18	chr10:43279800-43299400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:43279800-43299600	Strong transcription	Fetal Muscle Leg	muscle
20	chr10:43279800-43299600	Strong transcription	Left Ventricle	heart
21	chr10:43279800-43299600	Strong transcription	K562	blood
22	chr10:43279800-43299800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:43279800-43300200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:43279800-43300600	Strong transcription	NH-A	brain
25	chr10:43279800-43302000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:43279800-43302600	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr10:43279800-43303400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:43279800-43303400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:43279800-43303400	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr10:43279800-43303800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:43279800-43303800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr10:43279800-43305000	Strong transcription	Primary B cells from peripheral blood	blood
33	chr10:43279800-43306200	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr10:43279800-43306400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr10:43279800-43307600	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr10:43279800-43307800	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr10:43279800-43307800	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr10:43279800-43308400	Strong transcription	Fetal Intestine Large	intestine
39	chr10:43279800-43308800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:43279800-43309000	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr10:43279800-43324000	Strong transcription	Liver	Liver
42	chr10:43279800-43328200	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr10:43280000-43282400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:43280000-43282400	Strong transcription	Thymus	Thymus
45	chr10:43280000-43282600	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr10:43280000-43283400	Strong transcription	Rectal Smooth Muscle	rectum
47	chr10:43280000-43284400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:43280000-43284600	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr10:43280000-43285000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:43280000-43285000	Strong transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links