Variant report

Variant	rs638507
Chromosome Location	chr10:43254418-43254419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43250846..43253793-chr10:43254051..43256963,2	K562	blood:
2	chr10:43253135..43254665-chr10:43264247..43266986,2	MCF-7	breast:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1085783	1.00[ASN][1000 genomes]
rs1342143	1.00[ASN][1000 genomes]
rs17158193	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17159047	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17159071	0.86[AMR][1000 genomes]
rs17159198	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17344904	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17344997	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17345889	1.00[ASN][1000 genomes]
rs17429275	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429415	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17430796	1.00[ASN][1000 genomes]
rs1775069	1.00[ASN][1000 genomes]
rs1935644	1.00[ASN][1000 genomes]
rs2078397	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2744082	1.00[ASN][1000 genomes]
rs2795505	1.00[ASN][1000 genomes]
rs2796563	1.00[ASN][1000 genomes]
rs2796565	1.00[ASN][1000 genomes]
rs41295810	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61736599	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61842933	1.00[ASN][1000 genomes]
rs61842935	1.00[ASN][1000 genomes]
rs61843372	1.00[ASN][1000 genomes]
rs61843373	1.00[ASN][1000 genomes]
rs61843374	1.00[ASN][1000 genomes]
rs61843380	1.00[ASN][1000 genomes]
rs61843381	1.00[ASN][1000 genomes]
rs61843382	1.00[ASN][1000 genomes]
rs61843407	1.00[ASN][1000 genomes]
rs61843419	1.00[ASN][1000 genomes]
rs61843420	1.00[ASN][1000 genomes]
rs61843422	1.00[ASN][1000 genomes]
rs61843437	1.00[ASN][1000 genomes]
rs61843438	1.00[ASN][1000 genomes]
rs61843895	1.00[ASN][1000 genomes]
rs61843955	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843956	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843958	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843959	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844760	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844763	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844765	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844766	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61844768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844770	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844771	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844772	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844774	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844775	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844813	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844814	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs61844815	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844816	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844817	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844821	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61844822	0.80[EUR][1000 genomes]
rs61844827	1.00[ASN][1000 genomes]
rs61844828	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844829	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844830	0.86[AMR][1000 genomes]
rs61844832	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844835	1.00[ASN][1000 genomes]
rs61844837	1.00[ASN][1000 genomes]
rs61844848	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61844849	1.00[ASN][1000 genomes]
rs61844854	1.00[ASN][1000 genomes]
rs61845963	1.00[ASN][1000 genomes]
rs61845964	1.00[ASN][1000 genomes]
rs7089165	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7091439	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788248	1.00[ASN][1000 genomes]
rs788250	1.00[ASN][1000 genomes]
rs788286	1.00[ASN][1000 genomes]
rs788294	1.00[ASN][1000 genomes]
rs7904220	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7908539	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915796	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7923121	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv2757381	chr10:43104068-43352995	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv34929	chr10:43116194-43329770	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv895076	chr10:43234432-43326627	Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1047838	chr10:43234590-43379219	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv8626	chr10:43235537-43263641	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv825349	chr10:43238099-43265011	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43251000-43259600	Weak transcription	Gastric	stomach
2	chr10:43254000-43254600	Enhancers	HSMMtube	muscle

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