Variant report

Variant	rs17429275
Chromosome Location	chr10:43279365-43279366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43046301..43049301-chr10:43278095..43279962,3	K562	blood:
2	chr10:43132020..43136600-chr10:43277441..43279853,5	MCF-7	breast:
3	chr10:43132257..43135644-chr10:43275563..43280155,11	MCF-7	breast:
4	chr10:43132863..43135217-chr10:43276470..43279459,4	K562	blood:
5	chr10:43278278..43279935-chr10:43297692..43300575,2	K562	blood:
6	chr10:43132954..43135205-chr10:43277445..43279937,2	K562	blood:
7	chr10:42969989..42972327-chr10:43278200..43280239,2	K562	blood:

Variant related genes	Relation type
ENSG00000196693	Chromatin interaction
ENSG00000185904	Chromatin interaction
ENSG00000234420	Chromatin interaction
ENSG00000272373	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1085783	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1091925	0.92[EUR][1000 genomes]
rs1342143	1.00[ASN][1000 genomes]
rs17158193	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159047	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159071	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17159198	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17344904	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17344997	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17345889	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429415	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17430796	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17431976	0.80[CEU][hapmap]
rs1775069	1.00[ASN][1000 genomes]
rs1935644	1.00[ASN][1000 genomes]
rs2078397	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2744082	1.00[ASN][1000 genomes]
rs2795505	1.00[ASN][1000 genomes]
rs2796563	1.00[ASN][1000 genomes]
rs2796565	1.00[ASN][1000 genomes]
rs41295810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515365	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61736599	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61842933	1.00[ASN][1000 genomes]
rs61842935	1.00[ASN][1000 genomes]
rs61843368	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61843371	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61843372	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843373	1.00[ASN][1000 genomes]
rs61843374	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843380	1.00[ASN][1000 genomes]
rs61843381	1.00[ASN][1000 genomes]
rs61843382	1.00[ASN][1000 genomes]
rs61843407	1.00[ASN][1000 genomes]
rs61843419	1.00[ASN][1000 genomes]
rs61843420	1.00[ASN][1000 genomes]
rs61843422	1.00[ASN][1000 genomes]
rs61843437	1.00[ASN][1000 genomes]
rs61843438	1.00[ASN][1000 genomes]
rs61843457	1.00[ASN][1000 genomes]
rs61843459	1.00[ASN][1000 genomes]
rs61843895	1.00[ASN][1000 genomes]
rs61843955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61843956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61843958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61843959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61844760	1.00[ASN][1000 genomes]
rs61844763	1.00[ASN][1000 genomes]
rs61844765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844766	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61844768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844770	1.00[ASN][1000 genomes]
rs61844771	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844775	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844814	0.97[EUR][1000 genomes]
rs61844815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844821	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61844827	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844830	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61844832	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844835	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844837	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844848	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844849	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61844854	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845260	1.00[ASN][1000 genomes]
rs61845261	1.00[ASN][1000 genomes]
rs61845262	1.00[ASN][1000 genomes]
rs61845264	1.00[ASN][1000 genomes]
rs61845265	1.00[ASN][1000 genomes]
rs61845266	1.00[ASN][1000 genomes]
rs61845963	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61845964	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638507	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089165	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091439	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74135429	1.00[ASN][1000 genomes]
rs788248	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788250	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788286	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788294	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904220	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908539	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915796	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923121	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv2757381	chr10:43104068-43352995	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv34929	chr10:43116194-43329770	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv895076	chr10:43234432-43326627	Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1047838	chr10:43234590-43379219	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv947889	chr10:43278237-43290003	Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43277200-43279400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr10:43277200-43279400	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr10:43277200-43279400	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr10:43277200-43279400	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr10:43277200-43279400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:43277200-43279800	Active TSS	GM12878-XiMat	blood
7	chr10:43277400-43279400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:43277400-43279400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:43277400-43279400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:43277400-43279400	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr10:43277400-43279400	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr10:43277400-43279400	Active TSS	Fetal Intestine Large	intestine
13	chr10:43277400-43279400	Active TSS	Osteobl	bone
14	chr10:43277400-43279600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:43277400-43279800	Active TSS	A549	lung
16	chr10:43277600-43279400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:43277600-43279400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:43277600-43279400	Active TSS	K562	blood
19	chr10:43277600-43279400	Active TSS	NH-A	brain
20	chr10:43278400-43279400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:43278400-43279400	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr10:43278600-43279400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr10:43278600-43279400	Flanking Active TSS	Brain Anterior Caudate	brain
24	chr10:43278800-43279400	Flanking Active TSS	Dnd41	blood
25	chr10:43278800-43279400	Flanking Active TSS	HUVEC	blood vessel
26	chr10:43278800-43279600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr10:43279000-43279400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:43279000-43279400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:43279000-43279400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr10:43279000-43279400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:43279000-43279400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:43279000-43279400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:43279000-43279400	Active TSS	HepG2	liver
34	chr10:43279000-43279400	Flanking Active TSS	NHDF-Ad	bronchial
35	chr10:43279000-43279400	Flanking Active TSS	NHLF	lung
36	chr10:43279000-43279800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:43279000-43280000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:43279000-43280000	Weak transcription	Placenta	Placenta
39	chr10:43279000-43280200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:43279000-43281000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:43279000-43281000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:43279000-43281000	Weak transcription	Aorta	Aorta
43	chr10:43279000-43281000	Weak transcription	Esophagus	oesophagus
44	chr10:43279000-43281000	Weak transcription	Gastric	stomach
45	chr10:43279000-43281000	Weak transcription	Pancreas	Pancrea
46	chr10:43279000-43281000	Weak transcription	Spleen	Spleen
47	chr10:43279000-43284400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr10:43279000-43288200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr10:43279000-43292000	Weak transcription	Stomach Mucosa	stomach
50	chr10:43279200-43279400	Enhancers	Primary T cells from cord blood	blood

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