Variant report

Variant	rs61842933
Chromosome Location	chr10:43103445-43103446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43088290..43090642-chr10:43101359..43104222,2	K562	blood:
2	chr10:43088290..43091974-chr10:43101359..43104222,3	K562	blood:
3	chr10:43100572..43103779-chr10:43131525..43135101,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196693	Chromatin interaction
ENSG00000272373	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17429275	1.00[ASN][1000 genomes]
rs17429415	1.00[ASN][1000 genomes]
rs515365	1.00[ASN][1000 genomes]
rs61842931	1.00[ASN][1000 genomes]
rs61842935	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843026	1.00[ASN][1000 genomes]
rs61843895	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61843955	1.00[ASN][1000 genomes]
rs61843956	1.00[ASN][1000 genomes]
rs61843958	1.00[ASN][1000 genomes]
rs61843959	1.00[ASN][1000 genomes]
rs61844760	1.00[ASN][1000 genomes]
rs61844763	1.00[ASN][1000 genomes]
rs61844765	1.00[ASN][1000 genomes]
rs61844768	1.00[ASN][1000 genomes]
rs61844770	1.00[ASN][1000 genomes]
rs61844771	1.00[ASN][1000 genomes]
rs61844772	1.00[ASN][1000 genomes]
rs61844774	1.00[ASN][1000 genomes]
rs61844775	1.00[ASN][1000 genomes]
rs61844813	1.00[ASN][1000 genomes]
rs61845565	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61845568	1.00[ASN][1000 genomes]
rs638507	1.00[ASN][1000 genomes]
rs7089165	1.00[ASN][1000 genomes]
rs7904220	1.00[ASN][1000 genomes]
rs7908539	1.00[ASN][1000 genomes]
rs7915796	1.00[ASN][1000 genomes]
rs7923121	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817455	chr10:42607635-43151812	Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv895064	chr10:42783481-43243325	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	nsv469725	chr10:42965130-43178323	Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv482513	chr10:42965130-43178323	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
12	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
13	nsv975036	chr10:43090222-43132879	ZNF genes & repeats Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43077800-43109600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:43089600-43123600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:43089800-43107600	Weak transcription	HepG2	liver
4	chr10:43089800-43126000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:43089800-43133000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:43089800-43133000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:43089800-43133000	Weak transcription	Right Ventricle	heart
8	chr10:43090000-43119200	Weak transcription	Brain Anterior Caudate	brain
9	chr10:43090000-43119200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:43090200-43108600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:43090400-43107200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:43090400-43108000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:43090400-43118600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:43090600-43104800	Weak transcription	Hela-S3	cervix
15	chr10:43090600-43107200	Weak transcription	K562	blood
16	chr10:43090800-43133000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:43091000-43123800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:43091200-43107800	Weak transcription	Fetal Thymus	thymus
19	chr10:43091200-43108800	Weak transcription	Adipose Nuclei	Adipose
20	chr10:43091200-43123600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr10:43091200-43126000	Weak transcription	Small Intestine	intestine
22	chr10:43091200-43132800	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:43091400-43107600	Weak transcription	Psoas Muscle	Psoas
24	chr10:43091400-43108400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:43091400-43119600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:43091400-43132400	Weak transcription	HMEC	breast
27	chr10:43091400-43132800	Weak transcription	Colonic Mucosa	Colon
28	chr10:43091800-43107800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr10:43094000-43108400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:43094000-43108600	Weak transcription	Fetal Muscle Leg	muscle
31	chr10:43094000-43119400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:43094000-43119400	Weak transcription	Spleen	Spleen
33	chr10:43094200-43105200	Weak transcription	Fetal Kidney	kidney
34	chr10:43094200-43107600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:43094200-43119400	Weak transcription	Right Atrium	heart
36	chr10:43094400-43103600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:43094400-43133200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:43095400-43126000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:43095600-43125800	Weak transcription	HUVEC	blood vessel
40	chr10:43095800-43103600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:43096400-43103600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
42	chr10:43096800-43115000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr10:43096800-43119400	Weak transcription	NHEK	skin
44	chr10:43097200-43107400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:43097200-43115400	Weak transcription	Stomach Mucosa	stomach
46	chr10:43097600-43104200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr10:43097600-43118400	Weak transcription	Esophagus	oesophagus
48	chr10:43098400-43106200	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr10:43098400-43107400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr10:43098800-43108600	Weak transcription	Aorta	Aorta

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