Variant report

Variant	rs61843368
Chromosome Location	chr10:43354959-43354960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1085783	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1091925	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1342143	0.85[EUR][1000 genomes]
rs1625947	0.85[EUR][1000 genomes]
rs17158193	0.89[EUR][1000 genomes]
rs17159047	0.89[EUR][1000 genomes]
rs17159071	0.89[EUR][1000 genomes]
rs17159198	0.92[EUR][1000 genomes]
rs17344904	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17344997	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17345889	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17429275	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17429415	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17430796	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1775069	0.85[EUR][1000 genomes]
rs1935644	0.85[EUR][1000 genomes]
rs2078397	0.92[EUR][1000 genomes]
rs2744082	0.85[EUR][1000 genomes]
rs2795505	0.82[EUR][1000 genomes]
rs2796563	0.85[EUR][1000 genomes]
rs2796565	0.85[EUR][1000 genomes]
rs41295810	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61736599	0.88[EUR][1000 genomes]
rs61843371	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61843372	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61843374	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61843382	0.94[AMR][1000 genomes]
rs61843955	0.83[AMR][1000 genomes]
rs61843956	0.83[AMR][1000 genomes]
rs61843958	0.83[AMR][1000 genomes]
rs61843959	0.83[AMR][1000 genomes]
rs61844765	0.83[AMR][1000 genomes]
rs61844768	0.83[AMR][1000 genomes]
rs61844771	0.83[AMR][1000 genomes]
rs61844772	0.83[AMR][1000 genomes]
rs61844774	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61844775	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61844813	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61844814	0.89[EUR][1000 genomes]
rs61844815	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61844816	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61844817	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61844821	0.89[EUR][1000 genomes]
rs61844822	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61844827	0.89[EUR][1000 genomes]
rs61844828	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61844829	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61844830	0.91[EUR][1000 genomes]
rs61844832	0.92[EUR][1000 genomes]
rs61844835	0.88[EUR][1000 genomes]
rs61844837	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61844848	0.92[EUR][1000 genomes]
rs61844849	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61844854	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61845960	0.83[EUR][1000 genomes]
rs61845963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61845964	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7089165	0.88[EUR][1000 genomes]
rs7091439	0.92[EUR][1000 genomes]
rs788248	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs788250	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs788286	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs788294	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904220	0.89[EUR][1000 genomes]
rs7908539	0.92[EUR][1000 genomes]
rs7915796	0.89[EUR][1000 genomes]
rs7923121	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	nsv1047838	chr10:43234590-43379219	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
10	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
11	esv14695	chr10:43301539-43355457	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43347600-43360000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:43354200-43355000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:43354600-43355000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr10:43354600-43355200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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