Variant report

Variant	rs17159344
Chromosome Location	chr5:100111538-100111539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10515265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515266	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515267	1.00[ASN][1000 genomes]
rs1423381	1.00[EUR][1000 genomes]
rs17159370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159464	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159467	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159519	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159534	1.00[ASN][1000 genomes]
rs17159602	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159616	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159626	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17160705	1.00[EUR][1000 genomes]
rs17160732	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17160771	1.00[JPT][hapmap]
rs17160844	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2544911	1.00[EUR][1000 genomes]
rs2544914	1.00[EUR][1000 genomes]
rs2544915	1.00[EUR][1000 genomes]
rs2544917	1.00[EUR][1000 genomes]
rs2544919	0.87[EUR][1000 genomes]
rs2548272	1.00[EUR][1000 genomes]
rs2548277	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2561524	1.00[EUR][1000 genomes]
rs2561525	0.87[EUR][1000 genomes]
rs2561526	1.00[EUR][1000 genomes]
rs2725118	1.00[EUR][1000 genomes]
rs2725123	1.00[EUR][1000 genomes]
rs3776165	1.00[EUR][1000 genomes]
rs3776166	0.87[EUR][1000 genomes]
rs3776173	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3857364	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595534	1.00[JPT][hapmap]
rs6878151	1.00[ASN][1000 genomes]
rs6897681	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775624	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768777	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725476	1.00[ASN][1000 genomes]
rs980901	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948969	chr5:99534096-100133827	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1017420	chr5:99745775-100133140	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv537825	chr5:99745775-100133140	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	esv2762532	chr5:100041758-100136552	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100109200-100113000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr5:100109200-100113200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:100109200-100113200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:100109200-100113200	Weak transcription	Fetal Kidney	kidney
5	chr5:100110200-100112600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:100110600-100112400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:100110800-100111600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr5:100110800-100112200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr5:100110800-100113600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr5:100111200-100111600	Enhancers	Primary B cells from peripheral blood	blood
11	chr5:100111200-100113200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:100111200-100113400	Enhancers	Primary B cells from cord blood	blood
13	chr5:100111400-100111600	Enhancers	Adipose Nuclei	Adipose
14	chr5:100111400-100113000	Enhancers	GM12878-XiMat	blood
15	chr5:100111400-100114400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr5:100111400-100114400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:100111400-100114800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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