Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10515265	1.00[ASN][1000 genomes]
rs10515266	1.00[ASN][1000 genomes]
rs10515267	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159344	1.00[ASN][1000 genomes]
rs17159370	1.00[ASN][1000 genomes]
rs17159464	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17159467	1.00[ASN][1000 genomes]
rs17159519	1.00[ASN][1000 genomes]
rs17159534	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159602	1.00[ASN][1000 genomes]
rs17159616	1.00[ASN][1000 genomes]
rs17159626	1.00[ASN][1000 genomes]
rs17160732	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17160771	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17160844	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3776173	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3857364	1.00[ASN][1000 genomes]
rs6595534	1.00[JPT][hapmap]
rs6897681	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73775624	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs768777	1.00[ASN][1000 genomes]
rs7725476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100134400-100139200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:100135400-100139000	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:100136000-100137000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:100136400-100137000	ZNF genes & repeats	GM12878-XiMat	blood
5	chr5:100136600-100137200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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