Variant report

Variant	rs17159356
Chromosome Location	chr7:103778907-103778908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103769885..103772805-chr7:103778154..103780939,3	K562	blood:
2	chr7:103754828..103757477-chr7:103778721..103780963,2	MCF-7	breast:
3	chr7:103774534..103776451-chr7:103778597..103780870,2	K562	blood:
4	chr7:103773857..103776451-chr7:103778277..103781105,4	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11771421	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17159362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159421	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377164	1.00[YRI][hapmap]
rs17386465	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2299406	0.84[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap]
rs2307407	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56950973	0.81[AFR][1000 genomes]
rs7804341	0.81[AFR][1000 genomes]
rs7807600	0.88[LWK][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17159356	C12orf24	trans	lymphoblastoid	seeQTL

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103763400-103779400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:103764000-103783200	Weak transcription	NHLF	lung
4	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr7:103765600-103815000	Weak transcription	Brain Angular Gyrus	brain
7	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
8	chr7:103766200-103779000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:103766200-103779000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:103766200-103800000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:103766200-103803800	Weak transcription	Pancreas	Pancrea
12	chr7:103766200-103816000	Weak transcription	Brain Substantia Nigra	brain
13	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
14	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
15	chr7:103766400-103822600	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:103767200-103779000	Weak transcription	Fetal Brain Male	brain
17	chr7:103767200-103829200	Weak transcription	Gastric	stomach
18	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
19	chr7:103767600-103779000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:103767600-103820200	Weak transcription	Brain Germinal Matrix	brain
21	chr7:103768000-103779800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:103769200-103822600	Weak transcription	Fetal Kidney	kidney
23	chr7:103769400-103779800	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr7:103771800-103800000	Weak transcription	HSMM	muscle
25	chr7:103771800-103804400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr7:103771800-103807200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr7:103771800-103820000	Weak transcription	NHEK	skin
28	chr7:103772200-103792000	Weak transcription	Aorta	Aorta
29	chr7:103773200-103822800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr7:103773400-103782600	Weak transcription	HUVEC	blood vessel
31	chr7:103773600-103781000	Weak transcription	HSMMtube	muscle
32	chr7:103774600-103781000	Weak transcription	HepG2	liver
33	chr7:103774600-103803600	Weak transcription	Ovary	ovary
34	chr7:103774800-103802800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr7:103775200-103829200	Weak transcription	Lung	lung
36	chr7:103775400-103803400	Weak transcription	Left Ventricle	heart
37	chr7:103775800-103803800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr7:103776600-103779000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr7:103776800-103780000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr7:103776800-103781200	Weak transcription	A549	lung
41	chr7:103776800-103803800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr7:103776800-103820200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr7:103776800-103822800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr7:103777000-103779600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr7:103777000-103799800	Weak transcription	K562	blood
46	chr7:103777000-103803000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr7:103777000-103803800	Weak transcription	Brain Hippocampus Middle	brain
48	chr7:103777000-103804600	Weak transcription	Colonic Mucosa	Colon
49	chr7:103777000-103804800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr7:103777000-103805200	Weak transcription	Placenta	Placenta

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