Variant report

Variant	rs17377164
Chromosome Location	chr7:103781025-103781026
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103779479..103781336-chr7:103797104..103798810,2	MCF-7	breast:
2	chr7:103773857..103776451-chr7:103778277..103781105,4	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10487190	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10487191	0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11764162	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11767680	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11771050	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11771108	0.94[GIH][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11771398	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11773044	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11773664	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17159356	1.00[YRI][hapmap]
rs17324174	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17326187	0.97[GIH][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17327021	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17327119	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17377990	0.94[CEU][hapmap];0.85[CHD][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2014811	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2058722	0.85[EUR][1000 genomes]
rs2299404	0.86[CHD][hapmap];0.82[ASN][1000 genomes]
rs2299405	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2299406	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299410	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2299414	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2385142	0.94[GIH][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3779515	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3779516	0.80[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3779517	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3808003	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs3808004	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3808017	0.94[CEU][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4141408	0.94[CEU][hapmap];0.86[CHD][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56950973	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60023964	0.82[ASN][1000 genomes]
rs6961789	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6964461	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73189317	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73191412	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73191421	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7804341	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7807600	0.97[GIH][hapmap];0.81[LWK][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7808273	0.91[EUR][1000 genomes]
rs7811112	0.88[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17377164	MBLAC1	cis	parietal	SCAN
rs17377164	PVRIG	cis	cerebellum	SCAN

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:103764000-103783200	Weak transcription	NHLF	lung
3	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:103765600-103815000	Weak transcription	Brain Angular Gyrus	brain
6	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
7	chr7:103766200-103800000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:103766200-103803800	Weak transcription	Pancreas	Pancrea
9	chr7:103766200-103816000	Weak transcription	Brain Substantia Nigra	brain
10	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
11	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
12	chr7:103766400-103822600	Weak transcription	Colon Smooth Muscle	Colon
13	chr7:103767200-103829200	Weak transcription	Gastric	stomach
14	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
15	chr7:103767600-103820200	Weak transcription	Brain Germinal Matrix	brain
16	chr7:103769200-103822600	Weak transcription	Fetal Kidney	kidney
17	chr7:103771800-103800000	Weak transcription	HSMM	muscle
18	chr7:103771800-103804400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr7:103771800-103807200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:103771800-103820000	Weak transcription	NHEK	skin
21	chr7:103772200-103792000	Weak transcription	Aorta	Aorta
22	chr7:103773200-103822800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr7:103773400-103782600	Weak transcription	HUVEC	blood vessel
24	chr7:103774600-103803600	Weak transcription	Ovary	ovary
25	chr7:103774800-103802800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr7:103775200-103829200	Weak transcription	Lung	lung
27	chr7:103775400-103803400	Weak transcription	Left Ventricle	heart
28	chr7:103775800-103803800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr7:103776800-103781200	Weak transcription	A549	lung
30	chr7:103776800-103803800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr7:103776800-103820200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr7:103776800-103822800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr7:103777000-103799800	Weak transcription	K562	blood
34	chr7:103777000-103803000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr7:103777000-103803800	Weak transcription	Brain Hippocampus Middle	brain
36	chr7:103777000-103804600	Weak transcription	Colonic Mucosa	Colon
37	chr7:103777000-103804800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr7:103777000-103805200	Weak transcription	Placenta	Placenta
39	chr7:103777000-103819600	Weak transcription	Fetal Brain Female	brain
40	chr7:103777200-103781600	Weak transcription	Dnd41	blood
41	chr7:103777200-103805000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr7:103777200-103819400	Weak transcription	GM12878-XiMat	blood
43	chr7:103777400-103782200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr7:103777400-103801600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr7:103777400-103803400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr7:103777400-103805000	Weak transcription	HMEC	breast
47	chr7:103777400-103819800	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr7:103777600-103781800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr7:103777600-103785400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr7:103777600-103790400	Weak transcription	Fetal Lung	lung

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