Variant report

Variant	rs2299404
Chromosome Location	chr7:103775505-103775506
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103773857..103776451-chr7:103778277..103781105,4	K562	blood:
2	chr7:103769811..103772030-chr7:103775156..103777907,2	K562	blood:
3	chr7:103774534..103776451-chr7:103778597..103780870,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17324174	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17377164	0.86[CHD][hapmap];0.82[ASN][1000 genomes]
rs17377990	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2299405	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2299406	0.86[CHD][hapmap];0.82[ASN][1000 genomes]
rs2299410	0.82[ASN][1000 genomes]
rs3808017	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4141408	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56950973	0.82[ASN][1000 genomes]
rs60023964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961789	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6964461	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73189317	1.00[ASN][1000 genomes]
rs73189318	1.00[AFR][1000 genomes]
rs7804341	0.82[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103761400-103778600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:103763000-103777600	Weak transcription	Fetal Intestine Small	intestine
3	chr7:103763400-103779400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:103763600-103776200	Weak transcription	Colonic Mucosa	Colon
5	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:103764000-103783200	Weak transcription	NHLF	lung
7	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:103764400-103776200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:103764400-103776400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr7:103764400-103776400	Weak transcription	NH-A	brain
11	chr7:103764400-103777800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:103764400-103778400	Weak transcription	NHDF-Ad	bronchial
13	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr7:103765400-103778000	Weak transcription	Stomach Mucosa	stomach
15	chr7:103765600-103815000	Weak transcription	Brain Angular Gyrus	brain
16	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
17	chr7:103765800-103776400	Weak transcription	Fetal Brain Female	brain
18	chr7:103766000-103776200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr7:103766000-103778000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr7:103766200-103779000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:103766200-103779000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:103766200-103800000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr7:103766200-103803800	Weak transcription	Pancreas	Pancrea
24	chr7:103766200-103816000	Weak transcription	Brain Substantia Nigra	brain
25	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
26	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
27	chr7:103766400-103822600	Weak transcription	Colon Smooth Muscle	Colon
28	chr7:103767200-103776800	Weak transcription	Brain Anterior Caudate	brain
29	chr7:103767200-103779000	Weak transcription	Fetal Brain Male	brain
30	chr7:103767200-103829200	Weak transcription	Gastric	stomach
31	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
32	chr7:103767400-103778400	Weak transcription	Psoas Muscle	Psoas
33	chr7:103767600-103779000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr7:103767600-103820200	Weak transcription	Brain Germinal Matrix	brain
35	chr7:103768000-103779800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr7:103769000-103776800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:103769200-103778800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr7:103769200-103822600	Weak transcription	Fetal Kidney	kidney
39	chr7:103769400-103777000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr7:103769400-103778000	Strong transcription	Liver	Liver
41	chr7:103769400-103778200	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr7:103769400-103778400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:103769400-103778600	Strong transcription	Primary B cells from peripheral blood	blood
44	chr7:103769400-103778600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr7:103769400-103779800	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr7:103769600-103777200	Strong transcription	Stomach Smooth Muscle	stomach
47	chr7:103769600-103778200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr7:103769800-103777000	Strong transcription	K562	blood
49	chr7:103770000-103778200	Strong transcription	Adipose Nuclei	Adipose
50	chr7:103770000-103778400	Strong transcription	Primary T cells fromperipheralblood	blood

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