Variant report

Variant	rs7808273
Chromosome Location	chr7:103759385-103759386
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103756645..103759833-chr7:103761465..103765297,3	K562	blood:
2	chr7:103758005..103760749-chr7:103766868..103768778,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10487190	0.82[AMR][1000 genomes]
rs10487191	0.84[AMR][1000 genomes]
rs11764162	0.84[AMR][1000 genomes]
rs11767680	0.82[AMR][1000 genomes]
rs11770080	1.00[ASW][hapmap]
rs11770973	1.00[ASW][hapmap]
rs11771050	0.84[AMR][1000 genomes]
rs11771108	1.00[ASW][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes]
rs11771398	0.84[AMR][1000 genomes]
rs11771421	1.00[ASW][hapmap]
rs11772175	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11773044	0.84[AMR][1000 genomes]
rs11773664	0.84[AMR][1000 genomes]
rs17323636	0.94[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17324174	0.81[CEU][hapmap];0.81[CHB][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17326187	1.00[ASW][hapmap];0.84[AMR][1000 genomes]
rs17327021	0.82[AMR][1000 genomes]
rs17327119	0.82[AMR][1000 genomes]
rs17377164	0.92[MEX][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs17377990	0.81[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2014811	0.84[AMR][1000 genomes]
rs2058722	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2299404	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs2299405	0.81[CEU][hapmap];0.81[CHB][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2299406	0.92[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2299410	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2299414	0.82[AMR][1000 genomes]
rs2385142	0.81[TSI][hapmap]
rs3808004	0.84[AMR][1000 genomes]
rs3808017	0.81[CEU][hapmap];0.81[CHB][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4141408	1.00[ASW][hapmap];0.81[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56950973	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6961789	0.81[CEU][hapmap];0.81[CHB][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6964461	0.81[CEU][hapmap];0.81[CHB][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71558666	0.92[ASN][1000 genomes]
rs71558667	0.91[ASN][1000 genomes]
rs71558668	0.92[ASN][1000 genomes]
rs73189317	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73191412	0.84[AMR][1000 genomes]
rs73191421	0.84[AMR][1000 genomes]
rs7804341	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7807223	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7807600	0.81[TSI][hapmap];0.82[AMR][1000 genomes]
rs7811112	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7808273	PVRIG	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103752000-103765000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:103752200-103765400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:103759000-103765000	Weak transcription	K562	blood
4	chr7:103759200-103767000	Weak transcription	Psoas Muscle	Psoas

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