Variant report

Variant	rs11772175
Chromosome Location	chr7:103732511-103732512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17323636	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17377990	0.92[CHD][hapmap];0.90[GIH][hapmap];0.83[MEX][hapmap]
rs2299404	0.88[CHD][hapmap]
rs4141408	0.88[CHD][hapmap];0.90[GIH][hapmap];0.83[MEX][hapmap]
rs6978880	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71558666	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558667	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71558668	1.00[ASN][1000 genomes]
rs7807223	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808273	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7811112	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11772175	LRCH4	cis	parietal	SCAN
rs11772175	PVRIG	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103729400-103732800	Enhancers	Brain Germinal Matrix	brain
2	chr7:103729400-103733200	Enhancers	K562	blood
3	chr7:103730800-103732800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links