Variant report

Variant	rs17160392
Chromosome Location	chr5:107035972-107035973
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17160418	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56371890	0.81[AFR][1000 genomes]
rs57635818	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6883894	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6894529	0.81[AFR][1000 genomes]
rs73777712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777713	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107032400-107049000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:107032800-107037800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107032800-107040600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:107033000-107040600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:107033600-107038000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:107035200-107037200	Enhancers	NHDF-Ad	bronchial
7	chr5:107035600-107036800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:107035800-107036200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:107035800-107036800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:107035800-107036800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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