Variant report

Variant	rs6894529
Chromosome Location	chr5:107029788-107029789
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17160392	0.81[AFR][1000 genomes]
rs17160418	0.81[AFR][1000 genomes]
rs55923116	1.00[AMR][1000 genomes]
rs56371890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57635818	0.81[AFR][1000 genomes]
rs59293599	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6883894	0.84[AFR][1000 genomes]
rs6897425	1.00[AMR][1000 genomes]
rs73777703	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777712	0.81[AFR][1000 genomes]
rs73777713	0.81[AFR][1000 genomes]
rs73781157	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107024400-107032200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:107029200-107032000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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