Variant report

Variant	rs59293599
Chromosome Location	chr5:107024023-107024024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55923116	1.00[AMR][1000 genomes]
rs56371890	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6883894	0.81[AFR][1000 genomes]
rs6894529	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6897425	1.00[AMR][1000 genomes]
rs73777703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781157	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107018800-107029000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:107023600-107024200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:107023800-107024400	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:107023800-107025000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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