Variant report

Variant	rs17160542
Chromosome Location	chr5:107114506-107114507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12514464	0.94[EUR][1000 genomes]
rs12520844	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13164192	0.96[EUR][1000 genomes]
rs13360165	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2099328	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9328019	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107109800-107116800	Weak transcription	Fetal Intestine Large	intestine
2	chr5:107112000-107115000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:107112800-107116600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:107113000-107116600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:107113200-107115400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:107113200-107116800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:107113200-107116800	Weak transcription	Fetal Lung	lung
8	chr5:107113400-107115400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:107113400-107117200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:107114200-107114600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:107114200-107114600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr5:107114400-107114600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:107114400-107114600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:107114400-107114600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr5:107114400-107114800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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