Variant report

Variant	rs13164192
Chromosome Location	chr5:107117017-107117018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10075132	0.86[ASN][1000 genomes]
rs10076688	0.86[ASN][1000 genomes]
rs10479409	0.86[ASN][1000 genomes]
rs10515374	1.00[JPT][hapmap]
rs12514464	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12519591	1.00[JPT][hapmap]
rs12520844	0.96[EUR][1000 genomes]
rs13360165	0.96[EUR][1000 genomes]
rs17160227	1.00[JPT][hapmap]
rs17160542	0.96[EUR][1000 genomes]
rs2099328	0.96[EUR][1000 genomes]
rs6897852	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6897870	0.86[ASN][1000 genomes]
rs6898202	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7725794	0.86[ASN][1000 genomes]
rs7732162	1.00[JPT][hapmap]
rs9328019	0.96[EUR][1000 genomes]
rs9986282	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107113400-107117200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:107114600-107119800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:107116400-107118200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:107116600-107117200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr5:107116800-107117200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr5:107116800-107117200	Enhancers	Fetal Intestine Large	intestine
7	chr5:107116800-107117200	ZNF genes & repeats	Fetal Lung	lung
8	chr5:107116800-107117400	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr5:107116800-107124400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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