Variant report

Variant	rs6897870
Chromosome Location	chr5:107075241-107075242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10075132	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076688	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10479409	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12514464	0.86[ASN][1000 genomes]
rs13164192	0.86[ASN][1000 genomes]
rs6894244	0.87[EUR][1000 genomes]
rs6897852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898202	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725794	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9986282	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107075200-107075400	Enhancers	A549	lung
2	chr5:107075200-107075800	Enhancers	NHEK	skin
3	chr5:107075200-107076000	Enhancers	Hela-S3	cervix
4	chr5:107075200-107079200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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