Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr5:107075374-107075657	MCF10A-Er-Src	breast:	n/a	chr5:107075490-107075499
2	MAX	chr5:107075416-107075680	Hela-S3	cervix:	n/a	n/a
3	RCOR1	chr5:107075424-107075733	Hela-S3	cervix:	n/a	n/a
4	FOS	chr5:107075440-107075686	MCF10A-Er-Src	breast:	n/a	chr5:107075490-107075499
5	MAX	chr5:107075359-107076056	Hela-S3	cervix:	n/a	chr5:107075926-107075936
6	CEBPB	chr5:107075363-107075778	Hela-S3	cervix:	n/a	n/a
7	EP300	chr5:107075323-107075735	Hela-S3	cervix:	n/a	chr5:107075368-107075382
8	MYC	chr5:107075374-107075932	Hela-S3	cervix:	n/a	n/a
9	FOS	chr5:107075387-107075784	Hela-S3	cervix:	n/a	chr5:107075490-107075499

Variant related genes	Relation type
RN7SL782P	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10043284	1.00[JPT][hapmap]
rs10043302	1.00[JPT][hapmap]
rs10075132	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076688	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10479409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515374	1.00[JPT][hapmap]
rs12514464	0.86[ASN][1000 genomes]
rs12519552	1.00[JPT][hapmap]
rs12519591	1.00[JPT][hapmap]
rs12520660	1.00[JPT][hapmap]
rs13164192	0.86[ASN][1000 genomes]
rs17160227	1.00[JPT][hapmap]
rs6881619	1.00[JPT][hapmap]
rs6888194	1.00[JPT][hapmap]
rs6894244	0.88[EUR][1000 genomes]
rs6897852	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6897870	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs755966	1.00[JPT][hapmap]
rs7725794	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7732162	1.00[JPT][hapmap]
rs9986282	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107075200-107075800	Enhancers	NHEK	skin
2	chr5:107075200-107076000	Enhancers	Hela-S3	cervix
3	chr5:107075200-107079200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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