Variant report

Variant	rs7732162
Chromosome Location	chr5:106991031-106991032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106905731..106907400-chr5:106990438..106992005,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10043284	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10043302	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10044934	1.00[ASN][1000 genomes]
rs10515374	0.94[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110095	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12514246	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12519552	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12519591	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12520660	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12522223	1.00[ASN][1000 genomes]
rs17160227	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs58880008	1.00[ASN][1000 genomes]
rs6881619	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6888194	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6897852	1.00[JPT][hapmap]
rs6898202	1.00[JPT][hapmap]
rs755966	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7726649	1.00[ASN][1000 genomes]
rs957662	1.00[ASN][1000 genomes]
rs9986282	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv1797335	chr5:106981612-107004761	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106976600-106991600	Weak transcription	Left Ventricle	heart
2	chr5:106984400-106991600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:106985800-106992000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:106986000-106992200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:106986400-106993600	Enhancers	A549	lung
6	chr5:106986800-106991400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:106987600-107001000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:106988000-106992200	Enhancers	Fetal Heart	heart
9	chr5:106988200-106992200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:106989000-106992200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:106989200-106991600	Weak transcription	Aorta	Aorta
12	chr5:106989200-106992200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:106989200-106997000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:106989200-107003000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:106989400-107004000	Weak transcription	Fetal Stomach	stomach
16	chr5:106989600-106991200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:106989600-106997800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr5:106989600-107002000	Weak transcription	Fetal Lung	lung
19	chr5:106989800-106991400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr5:106989800-106997000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:106990000-106991400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr5:106990000-106991400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr5:106990000-106991600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr5:106990200-106991400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr5:106990200-106991800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr5:106990400-106997000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr5:106990800-106992200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr5:106990800-106992200	Enhancers	NHEK	skin

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