Variant report

Variant	rs10044934
Chromosome Location	chr5:106911881-106911882
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:106911216..106913509-chr5:107005819..107007430,2	MCF-7	breast:
2	chr5:106907050..106909866-chr5:106911029..106913761,2	K562	blood:
3	chr5:106907968..106909615-chr5:106911499..106913805,2	MCF-7	breast:
4	chr5:106911881..106914239-chr5:106916867..106919606,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184349	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10043284	1.00[ASN][1000 genomes]
rs10043302	1.00[ASN][1000 genomes]
rs10515374	1.00[ASN][1000 genomes]
rs12110095	1.00[ASN][1000 genomes]
rs12514246	1.00[ASN][1000 genomes]
rs12515248	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12519552	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12519591	1.00[ASN][1000 genomes]
rs12520660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522223	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17160227	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58880008	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58882389	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6881619	1.00[ASN][1000 genomes]
rs6888194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895165	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs755966	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726649	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7732162	1.00[ASN][1000 genomes]
rs9328006	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs957662	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106899400-106915600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:106907800-106912800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:106907800-106913400	Weak transcription	Right Ventricle	heart
4	chr5:106907800-106914000	Enhancers	Fetal Heart	heart
5	chr5:106908200-106912600	Weak transcription	Placenta	Placenta
6	chr5:106908200-106913800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:106908200-106916600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:106908400-106913800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:106908600-106912000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:106908600-106912000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:106908600-106913200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr5:106908800-106912400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:106908800-106912600	Weak transcription	Fetal Stomach	stomach
14	chr5:106908800-106917000	Weak transcription	HSMM	muscle
15	chr5:106908800-106917600	Enhancers	A549	lung
16	chr5:106909000-106912000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:106909000-106912200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:106909000-106912200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr5:106909000-106912400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:106909000-106912800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:106909000-106912800	Weak transcription	Right Atrium	heart
22	chr5:106909000-106913200	Weak transcription	Fetal Muscle Leg	muscle
23	chr5:106909000-106913800	Weak transcription	NHDF-Ad	bronchial
24	chr5:106909000-106914000	Weak transcription	Left Ventricle	heart
25	chr5:106909000-106914400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr5:106909000-106917000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:106909600-106912000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr5:106909600-106913800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr5:106910200-106912600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr5:106910200-106914000	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr5:106910400-106914000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr5:106910800-106912800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:106911000-106913000	Enhancers	GM12878-XiMat	blood
34	chr5:106911000-106913400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr5:106911000-106914200	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr5:106911000-106914400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr5:106911000-106914800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr5:106911400-106912000	Enhancers	Fetal Kidney	kidney
39	chr5:106911400-106912800	Enhancers	HUVEC	blood vessel
40	chr5:106911400-106913600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr5:106911400-106914200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr5:106911400-106915200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr5:106911400-106915600	Enhancers	Fetal Lung	lung
44	chr5:106911600-106914000	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr5:106911600-106914600	Enhancers	HMEC	breast
46	chr5:106911800-106912200	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr5:106911800-106912600	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr5:106911800-106914000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr5:106911800-106914800	Enhancers	NHEK	skin
50	chr5:106911800-106915000	Enhancers	Adipose Nuclei	Adipose

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