Variant report

Variant	rs6881619
Chromosome Location	chr5:106909060-106909061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:106906707..106911009-chr5:107006315..107009316,7	MCF-7	breast:
2	chr5:106900235..106903223-chr5:106906365..106909142,2	MCF-7	breast:
3	chr5:106907050..106909866-chr5:106911029..106913761,2	K562	blood:
4	chr5:106907968..106909615-chr5:106911499..106913805,2	MCF-7	breast:
5	chr5:106906689..106910307-chr5:107006069..107011101,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184349	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10043284	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043302	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10044934	1.00[ASN][1000 genomes]
rs10515374	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12110095	1.00[ASN][1000 genomes]
rs12514246	1.00[ASN][1000 genomes]
rs12519552	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12519591	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12520660	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12522223	1.00[ASN][1000 genomes]
rs17160227	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs58880008	1.00[ASN][1000 genomes]
rs6888194	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6897852	1.00[JPT][hapmap]
rs6898202	1.00[JPT][hapmap]
rs755966	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7726649	1.00[ASN][1000 genomes]
rs7732162	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs957662	1.00[ASN][1000 genomes]
rs9986282	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106899400-106915600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:106907800-106909400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:106907800-106909800	Enhancers	Fetal Brain Male	brain
4	chr5:106907800-106910800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:106907800-106912800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:106907800-106913400	Weak transcription	Right Ventricle	heart
7	chr5:106907800-106914000	Enhancers	Fetal Heart	heart
8	chr5:106908000-106911600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:106908200-106909600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:106908200-106909600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:106908200-106910400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr5:106908200-106911800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:106908200-106912600	Weak transcription	Placenta	Placenta
14	chr5:106908200-106913800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:106908200-106916600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:106908400-106913800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr5:106908600-106909200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:106908600-106909600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:106908600-106911400	Weak transcription	HUVEC	blood vessel
20	chr5:106908600-106912000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr5:106908600-106912000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:106908600-106913200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr5:106908800-106911000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:106908800-106911000	Weak transcription	GM12878-XiMat	blood
25	chr5:106908800-106911400	Weak transcription	Fetal Kidney	kidney
26	chr5:106908800-106912400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr5:106908800-106912600	Weak transcription	Fetal Stomach	stomach
28	chr5:106908800-106917000	Weak transcription	HSMM	muscle
29	chr5:106908800-106917600	Enhancers	A549	lung
30	chr5:106909000-106910000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr5:106909000-106910000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:106909000-106910200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr5:106909000-106910200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr5:106909000-106910400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr5:106909000-106910400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr5:106909000-106910600	Enhancers	Adipose Nuclei	Adipose
37	chr5:106909000-106911000	Enhancers	Fetal Lung	lung
38	chr5:106909000-106911600	Weak transcription	HMEC	breast
39	chr5:106909000-106911800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr5:106909000-106911800	Weak transcription	NHEK	skin
41	chr5:106909000-106912000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr5:106909000-106912200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr5:106909000-106912200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr5:106909000-106912400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr5:106909000-106912800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr5:106909000-106912800	Weak transcription	Right Atrium	heart
47	chr5:106909000-106913200	Weak transcription	Fetal Muscle Leg	muscle
48	chr5:106909000-106913800	Weak transcription	NHDF-Ad	bronchial
49	chr5:106909000-106914000	Weak transcription	Left Ventricle	heart
50	chr5:106909000-106914400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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