Variant report

Variant	rs17160801
Chromosome Location	chr5:107320133-107320134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17160808	1.00[ASN][1000 genomes]
rs17160819	1.00[ASN][1000 genomes]
rs17160820	1.00[ASN][1000 genomes]
rs55903922	1.00[ASN][1000 genomes]
rs73778605	1.00[AMR][1000 genomes]
rs73780466	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107313800-107321000	Weak transcription	Lung	lung
4	chr5:107314400-107320400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:107314600-107320800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:107316000-107327000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr5:107318800-107321000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:107319000-107321000	Weak transcription	Fetal Heart	heart
9	chr5:107319200-107321000	Weak transcription	Left Ventricle	heart
10	chr5:107319600-107325800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
12	chr5:107320000-107321600	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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