Variant report

Variant	rs17160820
Chromosome Location	chr5:107327023-107327024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11958297	1.00[CHB][hapmap]
rs17160801	1.00[ASN][1000 genomes]
rs17160808	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17160819	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17160836	1.00[CHB][hapmap]
rs55903922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56333026	1.00[AMR][1000 genomes]
rs56768771	1.00[AMR][1000 genomes]
rs73778608	1.00[AMR][1000 genomes]
rs73780466	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
3	chr5:107321200-107338800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:107325800-107327400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:107326600-107327200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:107326600-107327400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:107326600-107327400	Enhancers	Primary T cells fromperipheralblood	blood
8	chr5:107326800-107327200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:107326800-107327400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:107326800-107327400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr5:107326800-107327400	Enhancers	GM12878-XiMat	blood
12	chr5:107326800-107327600	Enhancers	Fetal Heart	heart
13	chr5:107327000-107327200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr5:107327000-107327400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:107327000-107327400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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