Variant report

Variant	rs17160836
Chromosome Location	chr5:107334495-107334496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10515382	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11951751	1.00[EUR][1000 genomes]
rs11958297	1.00[CHB][hapmap]
rs17160726	1.00[EUR][1000 genomes]
rs17160808	1.00[CHB][hapmap]
rs17160819	1.00[CHB][hapmap]
rs17160820	1.00[CHB][hapmap]
rs17160834	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17160868	1.00[EUR][1000 genomes]
rs28401752	1.00[EUR][1000 genomes]
rs6894641	1.00[EUR][1000 genomes]
rs73206542	1.00[EUR][1000 genomes]
rs73212205	1.00[EUR][1000 genomes]
rs73780459	1.00[EUR][1000 genomes]
rs7706050	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
3	chr5:107321200-107338800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:107327400-107353400	Weak transcription	Aorta	Aorta
5	chr5:107333400-107336400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:107333800-107338400	Weak transcription	NHDF-Ad	bronchial
7	chr5:107333800-107338800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:107333800-107338800	Weak transcription	Fetal Brain Male	brain
9	chr5:107334000-107334600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:107334200-107338600	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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