Variant report

Variant	rs11951751
Chromosome Location	chr5:107507774-107507775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10515382	1.00[EUR][1000 genomes]
rs11959579	1.00[AMR][1000 genomes]
rs17160834	1.00[EUR][1000 genomes]
rs17160836	1.00[EUR][1000 genomes]
rs17160868	1.00[EUR][1000 genomes]
rs28401752	1.00[EUR][1000 genomes]
rs2900121	1.00[AMR][1000 genomes]
rs60371985	1.00[AMR][1000 genomes]
rs60618863	1.00[AMR][1000 genomes]
rs6867342	1.00[AMR][1000 genomes]
rs6886830	1.00[AMR][1000 genomes]
rs6894641	1.00[EUR][1000 genomes]
rs73206542	1.00[EUR][1000 genomes]
rs73212205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73214564	1.00[AMR][1000 genomes]
rs73214582	1.00[AMR][1000 genomes]
rs73216312	1.00[AMR][1000 genomes]
rs73216346	1.00[AMR][1000 genomes]
rs7706050	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107474600-107511000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107475200-107527400	Weak transcription	Liver	Liver
4	chr5:107475800-107510400	Weak transcription	Fetal Intestine Small	intestine
5	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
6	chr5:107480800-107521000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:107482000-107510800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:107492200-107519800	Weak transcription	Ovary	ovary
9	chr5:107495400-107548800	Weak transcription	Pancreas	Pancrea
10	chr5:107496800-107528800	Weak transcription	Aorta	Aorta
11	chr5:107504800-107508200	Weak transcription	Brain Angular Gyrus	brain
12	chr5:107504800-107510400	Weak transcription	Fetal Lung	lung
13	chr5:107504800-107525200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:107505000-107508000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:107505400-107536800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:107505600-107509600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr5:107505600-107514400	Weak transcription	Fetal Heart	heart
18	chr5:107505600-107521800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr5:107506200-107518400	Weak transcription	Psoas Muscle	Psoas
20	chr5:107506200-107529400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:107506600-107509800	Weak transcription	Thymus	Thymus
22	chr5:107506600-107522800	Weak transcription	Fetal Muscle Leg	muscle
23	chr5:107506600-107524600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links