Variant report

Variant	rs28401752
Chromosome Location	chr5:107361270-107361271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10515382	1.00[EUR][1000 genomes]
rs11951751	1.00[EUR][1000 genomes]
rs17160726	1.00[EUR][1000 genomes]
rs17160834	1.00[EUR][1000 genomes]
rs17160836	1.00[EUR][1000 genomes]
rs17160868	1.00[EUR][1000 genomes]
rs6894641	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206542	1.00[EUR][1000 genomes]
rs73212205	1.00[EUR][1000 genomes]
rs73778622	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780459	1.00[EUR][1000 genomes]
rs7706050	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
2	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
4	chr5:107344000-107364200	Weak transcription	Psoas Muscle	Psoas
5	chr5:107344400-107363800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:107352800-107364200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:107359400-107361400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:107360800-107364200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:107361000-107361400	Weak transcription	Right Atrium	heart
10	chr5:107361000-107362200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:107361000-107364200	Weak transcription	Pancreas	Pancrea
12	chr5:107361000-107369800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:107361200-107362000	Enhancers	Fetal Heart	heart
14	chr5:107361200-107368000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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