Variant report

Variant	rs17160726
Chromosome Location	chr5:107253704-107253705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107252925..107255103-chr5:107256825..107259080,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10515382	1.00[EUR][1000 genomes]
rs17160834	1.00[EUR][1000 genomes]
rs17160836	1.00[EUR][1000 genomes]
rs17160868	1.00[EUR][1000 genomes]
rs28401752	1.00[EUR][1000 genomes]
rs61464466	0.83[AMR][1000 genomes]
rs6894641	1.00[EUR][1000 genomes]
rs73206542	1.00[EUR][1000 genomes]
rs73780459	1.00[EUR][1000 genomes]
rs7706050	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107248600-107258600	Weak transcription	Left Ventricle	heart
2	chr5:107251000-107254200	Enhancers	Fetal Brain Male	brain
3	chr5:107251200-107254200	Enhancers	Primary T cells from cord blood	blood
4	chr5:107251200-107254200	Enhancers	Fetal Brain Female	brain
5	chr5:107251600-107253800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:107251600-107261000	Weak transcription	Aorta	Aorta
7	chr5:107251800-107254000	Flanking Active TSS	Dnd41	blood
8	chr5:107252000-107254600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:107252600-107254800	Enhancers	Liver	Liver
10	chr5:107252800-107254600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:107253000-107253800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:107253000-107253800	Enhancers	Brain Germinal Matrix	brain
13	chr5:107253000-107254000	Enhancers	Thymus	Thymus
14	chr5:107253200-107254000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:107253200-107254000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:107253200-107254000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr5:107253200-107255000	Enhancers	NHDF-Ad	bronchial
18	chr5:107253200-107255400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:107253600-107253800	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr5:107253600-107254000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr5:107253600-107254000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr5:107253600-107254000	Enhancers	Pancreas	Pancrea
23	chr5:107253600-107254600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr5:107253600-107254600	Enhancers	Fetal Thymus	thymus
25	chr5:107253600-107254800	Enhancers	Osteobl	bone

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