Variant report

Variant	rs73780459
Chromosome Location	chr5:107261365-107261366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10515382	1.00[EUR][1000 genomes]
rs17160726	1.00[EUR][1000 genomes]
rs17160834	1.00[EUR][1000 genomes]
rs17160836	1.00[EUR][1000 genomes]
rs17160868	1.00[EUR][1000 genomes]
rs28401752	1.00[EUR][1000 genomes]
rs6894641	1.00[EUR][1000 genomes]
rs73206542	1.00[EUR][1000 genomes]
rs7706050	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107254000-107262600	Weak transcription	Pancreas	Pancrea
2	chr5:107257400-107262000	Enhancers	Fetal Thymus	thymus
3	chr5:107257800-107261600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:107258000-107261800	Enhancers	Thymus	Thymus
5	chr5:107258200-107262400	Enhancers	Primary T cells from cord blood	blood
6	chr5:107260600-107263000	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr5:107260800-107262400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr5:107261000-107261400	ZNF genes & repeats	Aorta	Aorta
9	chr5:107261000-107261400	Flanking Active TSS	Dnd41	blood
10	chr5:107261200-107261600	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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