Variant report

Variant	rs17161004
Chromosome Location	chr7:86431853-86431854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1013011	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17160998	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs17161001	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17161007	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17161014	1.00[AFR][1000 genomes]
rs17161023	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17697543	0.86[AFR][1000 genomes]
rs1963789	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2188291	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2214010	0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2214011	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs2214859	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3922329	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60525216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7776998	1.00[YRI][hapmap];0.99[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86423000-86432200	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:86423000-86432400	Weak transcription	Brain Angular Gyrus	brain
3	chr7:86423000-86444200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:86430600-86432800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:86430600-86432800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:86431400-86432000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:86431600-86432200	Enhancers	Brain Anterior Caudate	brain
8	chr7:86431800-86432200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:86431800-86432200	Enhancers	Brain Substantia Nigra	brain
10	chr7:86431800-86433000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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