Variant report

Variant	rs17161023
Chromosome Location	chr7:86449074-86449075
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1013011	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17160998	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs17161001	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs17161004	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17161007	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17161014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17697543	0.86[AFR][1000 genomes]
rs1963789	0.94[AFR][1000 genomes]
rs2188291	0.84[ASW][hapmap];0.94[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2214010	0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2214011	0.84[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2214859	0.98[AFR][1000 genomes]
rs3922329	0.84[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs59711461	0.81[AMR][1000 genomes]
rs60525216	1.00[AFR][1000 genomes]
rs7776998	0.84[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86442200-86449400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr7:86442200-86451800	Weak transcription	Brain Anterior Caudate	brain
3	chr7:86442200-86468400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:86443400-86480600	Weak transcription	Brain Angular Gyrus	brain
5	chr7:86444800-86452200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:86449000-86449400	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:86449000-86450000	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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