Variant report

Variant	rs17161009
Chromosome Location	chr5:107437015-107437016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107436261..107438688-chr5:107440363..107442788,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17161106	0.82[YRI][hapmap]
rs17165771	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107416000-107443600	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107427400-107443800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:107428200-107438200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:107429400-107437400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:107436000-107437400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:107436400-107437600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:107436400-107437800	Enhancers	Brain Anterior Caudate	brain
9	chr5:107436400-107437800	Enhancers	Brain Hippocampus Middle	brain
10	chr5:107436400-107437800	Enhancers	Brain Substantia Nigra	brain
11	chr5:107436600-107437200	Enhancers	Fetal Lung	lung
12	chr5:107436600-107437400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:107436600-107437600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:107436600-107437800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:107436600-107437800	Enhancers	Brain Angular Gyrus	brain
16	chr5:107436600-107437800	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr5:107436600-107437800	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr5:107436600-107439000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:107436800-107437200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr5:107436800-107437600	Weak transcription	Right Ventricle	heart
21	chr5:107436800-107438200	Enhancers	Brain Cingulate Gyrus	brain
22	chr5:107437000-107437400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:107437000-107437800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:107437000-107437800	Enhancers	Colon Smooth Muscle	Colon
25	chr5:107437000-107437800	Enhancers	Right Atrium	heart
26	chr5:107437000-107437800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr5:107437000-107438000	Enhancers	Osteobl	bone
28	chr5:107437000-107438400	Enhancers	Left Ventricle	heart
29	chr5:107437000-107438400	Enhancers	Psoas Muscle	Psoas
30	chr5:107437000-107438400	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr5:107437000-107439600	Enhancers	HUES64 Cell Line	embryonic stem cell

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