Variant report

Variant	rs17161106
Chromosome Location	chr5:107505532-107505533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs158414	1.00[MEX][hapmap]
rs17161009	0.82[YRI][hapmap]
rs286745	1.00[MEX][hapmap]
rs286784	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107474600-107511000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107475200-107527400	Weak transcription	Liver	Liver
4	chr5:107475800-107510400	Weak transcription	Fetal Intestine Small	intestine
5	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
6	chr5:107480800-107521000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:107482000-107510800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:107492200-107519800	Weak transcription	Ovary	ovary
9	chr5:107495400-107548800	Weak transcription	Pancreas	Pancrea
10	chr5:107496800-107528800	Weak transcription	Aorta	Aorta
11	chr5:107502800-107505600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:107502800-107505600	Enhancers	Fetal Heart	heart
13	chr5:107503400-107505600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:107504400-107505600	Enhancers	Brain Cingulate Gyrus	brain
15	chr5:107504400-107505600	Enhancers	Fetal Brain Male	brain
16	chr5:107504800-107508200	Weak transcription	Brain Angular Gyrus	brain
17	chr5:107504800-107510400	Weak transcription	Fetal Lung	lung
18	chr5:107504800-107525200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:107505000-107505800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:107505000-107508000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:107505400-107536800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links