Variant report

Variant	rs17161648
Chromosome Location	chr5:108575397-108575398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3797847	1.00[LWK][hapmap]
rs73215745	1.00[EUR][1000 genomes]
rs7737268	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108573200-108580800	Weak transcription	Aorta	Aorta
2	chr5:108573200-108582200	Weak transcription	Liver	Liver
3	chr5:108574600-108576400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:108574800-108575800	Enhancers	Fetal Muscle Leg	muscle
5	chr5:108574800-108577200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:108575000-108575600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:108575000-108575600	Enhancers	HSMMtube	muscle
8	chr5:108575000-108575800	Enhancers	Placenta	Placenta
9	chr5:108575200-108575600	Enhancers	Fetal Muscle Trunk	muscle
10	chr5:108575200-108575600	Enhancers	HSMM	muscle
11	chr5:108575200-108575800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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