Variant report

Variant	rs3797847
Chromosome Location	chr5:108424727-108424728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108421631..108425653-chr5:108427345..108431594,4	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10043207	0.90[JPT][hapmap]
rs10062069	0.90[JPT][hapmap]
rs11948270	1.00[JPT][hapmap]
rs11948684	1.00[JPT][hapmap]
rs11950761	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11951285	0.90[JPT][hapmap]
rs11951595	1.00[JPT][hapmap]
rs11955924	1.00[JPT][hapmap]
rs11958129	1.00[JPT][hapmap]
rs11960400	1.00[JPT][hapmap]
rs12153527	1.00[JPT][hapmap]
rs12153646	1.00[JPT][hapmap]
rs1366081	0.90[JPT][hapmap]
rs1896582	0.90[JPT][hapmap]
rs2416196	0.89[JPT][hapmap]
rs2416197	0.90[JPT][hapmap]
rs3797832	0.90[JPT][hapmap]
rs3797833	0.90[JPT][hapmap]
rs3797834	1.00[JPT][hapmap]
rs3797837	1.00[JPT][hapmap]
rs3797844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3797848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3797849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822684	1.00[JPT][hapmap]
rs3822685	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59672639	1.00[ASN][1000 genomes]
rs59812973	1.00[ASN][1000 genomes]
rs6865572	0.90[JPT][hapmap]
rs6872299	1.00[JPT][hapmap]
rs6882698	1.00[JPT][hapmap]
rs6884133	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6893501	1.00[JPT][hapmap]
rs72796601	1.00[ASN][1000 genomes]
rs72798567	1.00[ASN][1000 genomes]
rs72798568	1.00[ASN][1000 genomes]
rs7702557	1.00[JPT][hapmap]
rs7709840	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714599	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7717569	1.00[ASN][1000 genomes]
rs7718925	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7729380	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733971	1.00[JPT][hapmap]
rs7734437	1.00[JPT][hapmap]
rs7737268	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[LWK][hapmap]
rs9885203	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv969193	chr5:108410957-108429737	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108360400-108425200	Weak transcription	Aorta	Aorta
2	chr5:108410400-108441200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:108416400-108441200	Weak transcription	HSMM	muscle
4	chr5:108416800-108425800	Weak transcription	Fetal Intestine Small	intestine
5	chr5:108417200-108428400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr5:108418200-108426600	Weak transcription	Dnd41	blood
7	chr5:108418400-108427200	Weak transcription	Esophagus	oesophagus
8	chr5:108419600-108425600	Weak transcription	Pancreas	Pancrea
9	chr5:108422200-108434400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:108422800-108426600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:108422800-108444800	Weak transcription	Left Ventricle	heart
12	chr5:108423400-108425200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:108423800-108428000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr5:108424000-108425600	Weak transcription	Fetal Stomach	stomach
15	chr5:108424000-108431400	Weak transcription	NHEK	skin
16	chr5:108424400-108425600	Weak transcription	Gastric	stomach
17	chr5:108424600-108426800	Weak transcription	Lung	lung

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