Variant report

Variant	rs3797834
Chromosome Location	chr5:108401566-108401567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10043207	0.89[JPT][hapmap]
rs10061864	0.89[ASN][1000 genomes]
rs10062069	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs10066497	0.89[ASN][1000 genomes]
rs10477434	0.89[ASN][1000 genomes]
rs10477435	0.84[ASN][1000 genomes]
rs11240990	0.98[ASN][1000 genomes]
rs11948270	1.00[JPT][hapmap]
rs11948684	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11951285	0.89[JPT][hapmap]
rs11951595	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11955924	1.00[JPT][hapmap]
rs11958129	1.00[JPT][hapmap]
rs11960400	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12153527	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12153646	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12188521	0.82[ASN][1000 genomes]
rs13355279	0.89[ASN][1000 genomes]
rs13357674	0.89[ASN][1000 genomes]
rs1366081	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs17534347	0.82[ASN][1000 genomes]
rs17534396	0.82[ASN][1000 genomes]
rs1896582	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2416196	0.89[ASN][1000 genomes]
rs2416197	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs3797827	0.82[ASN][1000 genomes]
rs3797830	0.82[ASN][1000 genomes]
rs3797832	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs3797833	0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs3797837	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3797847	1.00[JPT][hapmap]
rs3822684	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3822685	1.00[JPT][hapmap]
rs56083128	0.82[ASN][1000 genomes]
rs58255942	0.82[ASN][1000 genomes]
rs59409290	0.82[ASN][1000 genomes]
rs60777927	0.89[ASN][1000 genomes]
rs61304250	0.83[EUR][1000 genomes]
rs6865572	0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs6869929	0.83[EUR][1000 genomes]
rs6872299	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6882698	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs6884133	1.00[JPT][hapmap]
rs6889213	0.83[EUR][1000 genomes]
rs6893501	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6893738	0.89[ASN][1000 genomes]
rs72790554	0.82[ASN][1000 genomes]
rs72790558	0.82[ASN][1000 genomes]
rs72790564	0.82[ASN][1000 genomes]
rs72790569	0.82[ASN][1000 genomes]
rs72790570	0.82[ASN][1000 genomes]
rs72790571	0.82[ASN][1000 genomes]
rs72790572	0.82[ASN][1000 genomes]
rs72790597	0.89[ASN][1000 genomes]
rs72790598	0.89[ASN][1000 genomes]
rs72790599	0.89[ASN][1000 genomes]
rs72790602	0.89[ASN][1000 genomes]
rs72792507	0.89[ASN][1000 genomes]
rs73778341	0.83[EUR][1000 genomes]
rs73778362	0.83[EUR][1000 genomes]
rs73779105	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73779109	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73779112	0.82[ASN][1000 genomes]
rs73779120	0.82[ASN][1000 genomes]
rs73780404	0.83[EUR][1000 genomes]
rs73781919	0.82[ASN][1000 genomes]
rs73781924	0.82[ASN][1000 genomes]
rs7702557	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7709840	0.82[JPT][hapmap]
rs7714599	1.00[JPT][hapmap]
rs7718925	1.00[JPT][hapmap]
rs7729380	1.00[JPT][hapmap]
rs7733971	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7734437	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs9885203	0.84[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108360400-108404800	Weak transcription	Colon Smooth Muscle	Colon
2	chr5:108360400-108425200	Weak transcription	Aorta	Aorta
3	chr5:108388200-108401800	Weak transcription	Ovary	ovary
4	chr5:108388800-108412000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:108390600-108401600	Weak transcription	HSMMtube	muscle
6	chr5:108401200-108402600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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