The 2.0 version of rSNPBase

Variant report

Variant rs72790554
Chromosome Location chr5:108363237-108363238
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:108350800-108390400 Weak transcription HSMMtube muscle
2 chr5:108352400-108365000 Weak transcription Fetal Intestine Large intestine
3 chr5:108352400-108381400 Weak transcription Fetal Lung lung
4 chr5:108355200-108363800 Weak transcription Muscle Satellite Cultured Cells --
5 chr5:108356000-108399000 Weak transcription HSMM muscle
6 chr5:108356400-108364200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr5:108356400-108389200 Weak transcription Primary B cells from cord blood blood
8 chr5:108358000-108366400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr5:108358400-108366600 Weak transcription Esophagus oesophagus
10 chr5:108359200-108363600 Weak transcription NHDF-Ad bronchial
11 chr5:108360200-108364000 Weak transcription HepG2 liver
12 chr5:108360200-108364200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr5:108360200-108374000 Weak transcription HUVEC blood vessel
14 chr5:108360400-108364200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr5:108360400-108364200 Weak transcription Fetal Adrenal Gland Adrenal Gland
16 chr5:108360400-108364400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr5:108360400-108366000 Weak transcription Fetal Heart heart
18 chr5:108360400-108366200 Weak transcription Left Ventricle heart
19 chr5:108360400-108366600 Weak transcription Brain Cingulate Gyrus brain
20 chr5:108360400-108367400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr5:108360400-108369000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr5:108360400-108371400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr5:108360400-108373400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr5:108360400-108381200 Weak transcription Adipose Nuclei Adipose
25 chr5:108360400-108389000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr5:108360400-108389400 Weak transcription Cortex derived primary cultured neurospheres brain
27 chr5:108360400-108389600 Weak transcription Brain Angular Gyrus brain
28 chr5:108360400-108389800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr5:108360400-108389800 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr5:108360400-108400400 Weak transcription NHEK skin
31 chr5:108360400-108404800 Weak transcription Colon Smooth Muscle Colon
32 chr5:108360400-108425200 Weak transcription Aorta Aorta
33 chr5:108360600-108364200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr5:108360600-108365200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr5:108360600-108366200 Weak transcription Brain Hippocampus Middle brain
36 chr5:108360600-108382400 Weak transcription Breast Myoepithelial Primary Cells Breast
37 chr5:108360600-108385000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr5:108363200-108363400 Enhancers ES-I3 Cell Line embryonic stem cell
39 chr5:108363200-108363400 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
40 chr5:108363200-108363400 Enhancers Rectal Mucosa Donor 29 rectum
41 chr5:108363200-108367000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015