Variant report

Variant	rs7726922
Chromosome Location	chr5:108370022-108370023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10043207	0.89[EUR][1000 genomes]
rs10061582	0.94[ASN][1000 genomes]
rs10447249	0.84[EUR][1000 genomes]
rs10515399	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs11948270	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11948684	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs11950165	0.83[EUR][1000 genomes]
rs11951285	0.88[EUR][1000 genomes]
rs11951595	0.89[EUR][1000 genomes]
rs11955924	0.80[CEU][hapmap];0.88[EUR][1000 genomes]
rs11956572	0.88[EUR][1000 genomes]
rs11956900	0.83[EUR][1000 genomes]
rs11958129	0.88[EUR][1000 genomes]
rs11960268	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11960336	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11960400	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs12153527	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs12153646	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs12188521	0.88[EUR][1000 genomes]
rs17534347	0.88[EUR][1000 genomes]
rs17534396	0.87[EUR][1000 genomes]
rs2043287	0.82[ASN][1000 genomes]
rs3797819	0.90[JPT][hapmap]
rs3797820	0.90[JPT][hapmap]
rs3797823	0.93[CEU][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs3797825	0.94[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs3797827	0.88[EUR][1000 genomes]
rs3797830	0.88[EUR][1000 genomes]
rs3822684	0.88[EUR][1000 genomes]
rs4404726	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4957793	0.90[JPT][hapmap];0.83[YRI][hapmap];0.80[ASN][1000 genomes]
rs55899933	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56121551	0.80[ASN][1000 genomes]
rs56382548	0.88[EUR][1000 genomes]
rs57221554	0.87[EUR][1000 genomes]
rs57814250	0.91[EUR][1000 genomes]
rs58255942	0.86[EUR][1000 genomes]
rs58499805	0.88[EUR][1000 genomes]
rs58647764	0.80[ASN][1000 genomes]
rs58729959	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59409290	0.91[EUR][1000 genomes]
rs60584949	0.88[EUR][1000 genomes]
rs60834821	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66623856	0.87[EUR][1000 genomes]
rs66851282	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67053762	0.86[ASN][1000 genomes]
rs67586696	0.85[EUR][1000 genomes]
rs6861439	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6867147	0.83[EUR][1000 genomes]
rs6872299	0.82[CEU][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6882759	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs6884648	0.80[ASN][1000 genomes]
rs6893501	0.85[CEU][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6893984	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72789336	0.83[EUR][1000 genomes]
rs72789338	0.83[EUR][1000 genomes]
rs72789339	0.83[EUR][1000 genomes]
rs72790513	0.83[EUR][1000 genomes]
rs72790518	0.87[EUR][1000 genomes]
rs72790537	0.88[EUR][1000 genomes]
rs72790543	0.88[EUR][1000 genomes]
rs72790544	0.88[EUR][1000 genomes]
rs72790554	0.89[EUR][1000 genomes]
rs72790558	0.89[EUR][1000 genomes]
rs72790564	0.89[EUR][1000 genomes]
rs72790569	0.81[EUR][1000 genomes]
rs72790570	0.81[EUR][1000 genomes]
rs72790571	0.91[EUR][1000 genomes]
rs72790572	0.90[EUR][1000 genomes]
rs72793921	0.86[EUR][1000 genomes]
rs73211549	0.80[ASN][1000 genomes]
rs73211553	0.80[ASN][1000 genomes]
rs73211559	0.80[ASN][1000 genomes]
rs73211560	0.80[ASN][1000 genomes]
rs73778344	0.80[ASN][1000 genomes]
rs73778358	0.80[ASN][1000 genomes]
rs73778371	0.83[EUR][1000 genomes]
rs73778394	0.88[EUR][1000 genomes]
rs73779112	0.91[EUR][1000 genomes]
rs73780406	0.86[EUR][1000 genomes]
rs73781924	0.89[EUR][1000 genomes]
rs7710527	0.82[JPT][hapmap]
rs7719638	1.00[JPT][hapmap]
rs7723942	0.88[EUR][1000 genomes]
rs7725708	0.88[EUR][1000 genomes]
rs7731221	0.81[EUR][1000 genomes]
rs7732335	0.94[CEU][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs7732510	0.88[EUR][1000 genomes]
rs7734092	0.90[JPT][hapmap]
rs7734110	0.90[JPT][hapmap]
rs7735749	0.90[JPT][hapmap];0.83[YRI][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108350800-108390400	Weak transcription	HSMMtube	muscle
2	chr5:108352400-108381400	Weak transcription	Fetal Lung	lung
3	chr5:108356000-108399000	Weak transcription	HSMM	muscle
4	chr5:108356400-108389200	Weak transcription	Primary B cells from cord blood	blood
5	chr5:108360200-108374000	Weak transcription	HUVEC	blood vessel
6	chr5:108360400-108371400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:108360400-108373400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:108360400-108381200	Weak transcription	Adipose Nuclei	Adipose
9	chr5:108360400-108389000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:108360400-108389400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:108360400-108389600	Weak transcription	Brain Angular Gyrus	brain
12	chr5:108360400-108389800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:108360400-108389800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr5:108360400-108400400	Weak transcription	NHEK	skin
15	chr5:108360400-108404800	Weak transcription	Colon Smooth Muscle	Colon
16	chr5:108360400-108425200	Weak transcription	Aorta	Aorta
17	chr5:108360600-108382400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr5:108360600-108385000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:108364600-108374000	Weak transcription	A549	lung
20	chr5:108364800-108370800	Weak transcription	Osteobl	bone
21	chr5:108364800-108371000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr5:108365600-108389400	Weak transcription	HepG2	liver
23	chr5:108366600-108387200	Weak transcription	GM12878-XiMat	blood
24	chr5:108366800-108377400	Weak transcription	Fetal Heart	heart
25	chr5:108367000-108387000	Weak transcription	Left Ventricle	heart
26	chr5:108367800-108375200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:108368800-108371000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:108368800-108371000	Enhancers	NHDF-Ad	bronchial
29	chr5:108368800-108387400	Weak transcription	Pancreas	Pancrea
30	chr5:108370000-108370600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:108370000-108370600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr5:108370000-108371000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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