Variant report

Variant	rs6861439
Chromosome Location	chr5:108330182-108330183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10061582	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10515399	0.85[ASN][1000 genomes]
rs11948270	0.85[ASN][1000 genomes]
rs11960268	0.85[ASN][1000 genomes]
rs11960336	0.85[ASN][1000 genomes]
rs2043287	0.80[ASN][1000 genomes]
rs3797825	0.81[ASN][1000 genomes]
rs4404726	0.96[ASN][1000 genomes]
rs4957793	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs55899933	0.84[ASN][1000 genomes]
rs56121551	0.85[ASN][1000 genomes]
rs57814250	0.83[ASN][1000 genomes]
rs58647764	0.85[ASN][1000 genomes]
rs58729959	0.85[ASN][1000 genomes]
rs60834821	0.96[ASN][1000 genomes]
rs66851282	0.85[ASN][1000 genomes]
rs67053762	0.90[ASN][1000 genomes]
rs6872299	0.85[ASN][1000 genomes]
rs6882759	0.85[ASN][1000 genomes]
rs6884648	0.85[ASN][1000 genomes]
rs6893501	0.85[ASN][1000 genomes]
rs6893984	0.85[ASN][1000 genomes]
rs73209364	0.82[ASN][1000 genomes]
rs73209368	0.81[ASN][1000 genomes]
rs73209370	0.83[ASN][1000 genomes]
rs73211527	0.83[ASN][1000 genomes]
rs73211528	0.83[ASN][1000 genomes]
rs73211549	0.85[ASN][1000 genomes]
rs73211553	0.85[ASN][1000 genomes]
rs73211559	0.85[ASN][1000 genomes]
rs73211560	0.85[ASN][1000 genomes]
rs73778332	0.82[ASN][1000 genomes]
rs73778336	0.83[ASN][1000 genomes]
rs73778344	0.85[ASN][1000 genomes]
rs73778358	0.85[ASN][1000 genomes]
rs7719638	0.83[ASN][1000 genomes]
rs7726922	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7731116	0.82[ASN][1000 genomes]
rs7731221	0.82[ASN][1000 genomes]
rs7734092	0.81[ASN][1000 genomes]
rs7734110	0.81[ASN][1000 genomes]
rs7735749	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9326757	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016343	chr5:108220116-108364687	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv882691	chr5:108229760-108366473	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv4952	chr5:108324146-108369353	Enhancers Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108301600-108361200	Weak transcription	Primary T cells from cord blood	blood
2	chr5:108302200-108330200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:108303200-108331800	Weak transcription	Ovary	ovary
4	chr5:108308400-108336000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:108309800-108333600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr5:108319800-108340800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:108320000-108335000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:108325800-108335400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:108326000-108333600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:108326400-108330200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:108327600-108333400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:108327800-108334000	Weak transcription	Right Ventricle	heart
13	chr5:108328400-108330600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:108328800-108342000	Weak transcription	Right Atrium	heart
15	chr5:108329400-108330200	ZNF genes & repeats	Brain Hippocampus Middle	brain
16	chr5:108329400-108330200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
17	chr5:108329400-108330200	ZNF genes & repeats	Fetal Lung	lung
18	chr5:108329400-108333400	Weak transcription	Esophagus	oesophagus
19	chr5:108329400-108334000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:108329600-108333400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:108329600-108346200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:108329600-108359600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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