Variant report

Variant	rs10061582
Chromosome Location	chr5:108332203-108332204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10515399	0.86[ASN][1000 genomes]
rs11948270	0.86[ASN][1000 genomes]
rs11960268	0.86[ASN][1000 genomes]
rs11960336	0.86[ASN][1000 genomes]
rs2043287	0.82[ASN][1000 genomes]
rs28733366	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3797823	0.81[ASN][1000 genomes]
rs3797825	0.82[ASN][1000 genomes]
rs4404726	0.94[ASN][1000 genomes]
rs4957793	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs55899933	0.83[ASN][1000 genomes]
rs56121551	0.86[ASN][1000 genomes]
rs57814250	0.85[ASN][1000 genomes]
rs58647764	0.86[ASN][1000 genomes]
rs58729959	0.86[ASN][1000 genomes]
rs60834821	0.94[ASN][1000 genomes]
rs66851282	0.86[ASN][1000 genomes]
rs67053762	0.92[ASN][1000 genomes]
rs6861439	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6872299	0.86[ASN][1000 genomes]
rs6882759	0.86[ASN][1000 genomes]
rs6884648	0.86[ASN][1000 genomes]
rs6893501	0.86[ASN][1000 genomes]
rs6893984	0.86[ASN][1000 genomes]
rs73209364	0.83[ASN][1000 genomes]
rs73209368	0.82[ASN][1000 genomes]
rs73209370	0.85[ASN][1000 genomes]
rs73211527	0.85[ASN][1000 genomes]
rs73211528	0.85[ASN][1000 genomes]
rs73211549	0.86[ASN][1000 genomes]
rs73211553	0.86[ASN][1000 genomes]
rs73211559	0.86[ASN][1000 genomes]
rs73211560	0.86[ASN][1000 genomes]
rs73778332	0.83[ASN][1000 genomes]
rs73778336	0.85[ASN][1000 genomes]
rs73778344	0.86[ASN][1000 genomes]
rs73778358	0.86[ASN][1000 genomes]
rs7719638	0.85[ASN][1000 genomes]
rs7726922	0.94[ASN][1000 genomes]
rs7731116	0.83[ASN][1000 genomes]
rs7731221	0.83[ASN][1000 genomes]
rs7734092	0.82[ASN][1000 genomes]
rs7734110	0.82[ASN][1000 genomes]
rs7735749	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9326757	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016343	chr5:108220116-108364687	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv882691	chr5:108229760-108366473	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv4952	chr5:108324146-108369353	Enhancers Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108301600-108361200	Weak transcription	Primary T cells from cord blood	blood
2	chr5:108308400-108336000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:108309800-108333600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr5:108319800-108340800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:108320000-108335000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr5:108325800-108335400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:108326000-108333600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:108327600-108333400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:108327800-108334000	Weak transcription	Right Ventricle	heart
10	chr5:108328800-108342000	Weak transcription	Right Atrium	heart
11	chr5:108329400-108333400	Weak transcription	Esophagus	oesophagus
12	chr5:108329400-108334000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:108329600-108333400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:108329600-108346200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:108329600-108359600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:108330200-108336000	Weak transcription	Brain Hippocampus Middle	brain
17	chr5:108330200-108336400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr5:108330200-108351800	Weak transcription	Fetal Lung	lung
19	chr5:108330600-108333200	Weak transcription	Fetal Stomach	stomach
20	chr5:108331200-108339400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr5:108332000-108333600	Weak transcription	Fetal Intestine Small	intestine
22	chr5:108332200-108332600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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