The 2.0 version of rSNPBase

Variant report

Variant rs56121551
Chromosome Location chr5:108312434-108312435
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:108203800-108323400 Weak transcription Primary B cells from cord blood blood
2 chr5:108217600-108323200 Weak transcription Left Ventricle heart
3 chr5:108277600-108322400 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr5:108279200-108325600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
5 chr5:108281000-108313400 Weak transcription Adipose Nuclei Adipose
6 chr5:108282200-108324600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr5:108282400-108327200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr5:108283400-108319000 Weak transcription Muscle Satellite Cultured Cells --
9 chr5:108289200-108318600 Weak transcription NHDF-Ad bronchial
10 chr5:108290000-108313600 Weak transcription Aorta Aorta
11 chr5:108290000-108322000 Weak transcription Rectal Smooth Muscle rectum
12 chr5:108290000-108328800 Weak transcription Esophagus oesophagus
13 chr5:108293400-108325600 Weak transcription NHEK skin
14 chr5:108294400-108329400 Weak transcription Brain Hippocampus Middle brain
15 chr5:108295200-108319400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr5:108295800-108316600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr5:108297000-108313400 Weak transcription Breast Myoepithelial Primary Cells Breast
18 chr5:108298000-108316400 Weak transcription Brain Substantia Nigra brain
19 chr5:108298200-108315800 Weak transcription HepG2 liver
20 chr5:108299600-108328800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr5:108300400-108314200 Weak transcription NH-A brain
22 chr5:108301400-108328600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr5:108301600-108361200 Weak transcription Primary T cells from cord blood blood
24 chr5:108301800-108318600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
25 chr5:108302200-108330200 Weak transcription Stomach Smooth Muscle stomach
26 chr5:108303000-108313600 Weak transcription Lung lung
27 chr5:108303000-108318800 Weak transcription Brain Angular Gyrus brain
28 chr5:108303000-108319400 Weak transcription HSMM muscle
29 chr5:108303000-108329000 Weak transcription Gastric stomach
30 chr5:108303200-108315400 Weak transcription Fetal Stomach stomach
31 chr5:108303200-108318800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr5:108303200-108321200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr5:108303200-108322200 Weak transcription Pancreas Pancrea
34 chr5:108303200-108322400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr5:108303200-108331800 Weak transcription Ovary ovary
36 chr5:108303600-108315600 Weak transcription HMEC breast
37 chr5:108303800-108321000 Weak transcription Fetal Lung lung
38 chr5:108303800-108322000 Weak transcription Primary hematopoietic stem cells blood
39 chr5:108303800-108322200 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr5:108304000-108328800 Weak transcription Fetal Intestine Small intestine
41 chr5:108308400-108328800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr5:108308400-108336000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr5:108309800-108333600 Weak transcription Fetal Muscle Trunk muscle
44 chr5:108310000-108323400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr5:108310200-108322400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
46 chr5:108310200-108322400 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr5:108310400-108322400 Weak transcription Rectal Mucosa Donor 31 rectum
48 chr5:108311200-108313600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr5:108311400-108314400 Weak transcription Placenta Amnion Placenta Amnion
50 chr5:108311600-108321200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015